Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20099
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 311 LSVADPQLVAVLHGVPTSVMIRLLTTFWMMEPLPW 207
           LS  DP +V     +P  ++ R L  F+  E LP+
Sbjct: 320 LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF 354


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 311 LSVADPQLVAVLHGVPTSVMIRLLTTFWMMEPLPW 207
           LS  DP +V     +P  ++ R L  F+  E LP+
Sbjct: 26  LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF 60


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 223 WSPCLGSRIPSSDGQRCRSHR 161
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,145
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)