Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20099
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    31   0.77 
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    30   1.0  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    30   1.0  
At2g25730.1 68415.m03084 expressed protein                             29   1.8  
At4g01080.1 68417.m00146 expressed protein                             29   3.1  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   5.4  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   5.4  
At2g37420.1 68415.m04589 kinesin motor protein-related                 28   5.4  
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.4  
At1g01060.2 68414.m00007 myb family transcription factor contain...    28   5.4  
At1g01060.1 68414.m00006 myb family transcription factor contain...    28   5.4  
At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi...    27   9.5  
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim...    27   9.5  

>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor [Homo
           sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1706

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 220 SIIQNVVNNLIMTEVGTPWSTATSCGSATDST 315
           +I++ +VN L+ T +G P  ++T+   A DST
Sbjct: 450 NILERIVNGLLKTALGPPTGSSTTLSPAQDST 481


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +1

Query: 136 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIMTEVGTPWSTATSCG-SAT 306
           EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++ ++ T  + + S G S  
Sbjct: 298 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQAGSFSRGPSEF 357

Query: 307 DSTLSESTSPITL 345
           ++  S  T  ++L
Sbjct: 358 EANGSHGTDTLSL 370


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +1

Query: 136 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIMTEVGTPWSTATSCG-SAT 306
           EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++ ++ T  + + S G S  
Sbjct: 299 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQAGSFSRGPSEF 358

Query: 307 DSTLSESTSPITL 345
           ++  S  T  ++L
Sbjct: 359 EANGSHGTDTLSL 371


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -2

Query: 333  GSTF*QCAVRCRPTACSSTPWCSDFRHDQVVNYILDDGALALVLVFQALTDSAVVVTGED 154
            G +F     R  PT   S  W ++  +++ VN ++D+G L   L   AL+D  +     D
Sbjct: 1282 GGSFENGVCRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDAL---ALSDRFLRNGASD 1338

Query: 153  AVVQFLLE 130
             ++Q L++
Sbjct: 1339 WLLQLLIK 1346


>At4g01080.1 68417.m00146 expressed protein 
          Length = 442

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 327 TF*QCAVRCRPTACSSTPWCSDFRHDQVVNYILDDGALALVLVF 196
           TF + A     ++ SS P C+D RH   V + L    +AL   F
Sbjct: 21  TFEEAASSSSSSSSSSVPSCTDHRHRTFVKFFLYFSLVALAYYF 64


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 139 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNN 246
           K+ + IL+G  D A     EY  Q K   IQN++NN
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNN 138


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 139 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNN 246
           K+ + IL+G  D A     EY  Q K   IQN++NN
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNN 138


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 498 TLWETTRVYFKIHNTKVQPVLETKFDD 578
           TLWETT    K  NTK Q  L    +D
Sbjct: 863 TLWETTETGIKNLNTKYQQELNVTMED 889


>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 484

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 148 NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIMTEVGTPWSTATSCGSATDSTLSES 327
           N + TG+ +  + +  E  N+GKG II+     +++ +        T CG   +STL   
Sbjct: 326 NQVGTGENEDWLPKGFEERNKGKGLIIRGWAPQVLILDHKAIGGFVTHCG--WNSTLEGI 383

Query: 328 TSPITLDSSWP 360
            + + +  +WP
Sbjct: 384 AAGLPM-VTWP 393


>At1g01060.2 68414.m00007 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           identical to cDNA  LATE ELONGATED HYPOCOTYL MYB
           transcription factor GI:3281845
          Length = 645

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 166 DYDSAVRQSLEYENQGKGSIIQNVVNNLIMTEVGTPWSTATSCGSATDSTLSESTSP 336
           DY S ++ S  + N    +++QN   +   T   + W  A S G++ DS+   S+SP
Sbjct: 286 DYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYA-SVGNSGDSSTPMSSSP 341


>At1g01060.1 68414.m00006 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           identical to cDNA  LATE ELONGATED HYPOCOTYL MYB
           transcription factor GI:3281845
          Length = 645

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 166 DYDSAVRQSLEYENQGKGSIIQNVVNNLIMTEVGTPWSTATSCGSATDSTLSESTSP 336
           DY S ++ S  + N    +++QN   +   T   + W  A S G++ DS+   S+SP
Sbjct: 286 DYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYA-SVGNSGDSSTPMSSSP 341


>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 710

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 252 HDGSRNTMEYCYKLWVGNGQHI-VRKYFPY 338
           H+  RNT+ Y Y L  GNG+ I V    PY
Sbjct: 170 HEFVRNTLVYMYSLCSGNGEAIRVLDDLPY 199


>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
           similarity to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; contains Pfam profiles PF04824:
           Conserved region of Rad21 / Rec8 like protein, PF04825:
           N terminus of Rad21 / Rec8 like protein; supporting cDNA
           gi|18157648|gb|AF400129.1|AF400129
          Length = 1031

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 255 HDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQF 139
           + + VNY+ DD + AL+ V QA   +AV +  E++   +
Sbjct: 67  YSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPY 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,321
Number of Sequences: 28952
Number of extensions: 241732
Number of successful extensions: 519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)