Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20098
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 28 1.1
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 1.9
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 4.4
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 4.4
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 5.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.7
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 7.7
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 65 ILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQK 166
I+E+T +++S+ KL +ESRD + S++++
Sbjct: 31 IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 392 YSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVXNGQHSSRSTVATSPSQETG 553
Y + P+I+ R RS N + ++ ++ NGQ SRS A +E+G
Sbjct: 623 YDVNAPNIVGNKPVRRKRS-NSITQLTEFVKQPKINGQRESRSAAAARKKEESG 675
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.6 bits (56), Expect = 2.5
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 8 LPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLLPTQESRDLAE----AIHSYVQKKLR 175
L L + EK+ D EKI +V+QIL S +Q L+ + + +H+ +K LR
Sbjct: 370 LHALCSSLEKFTDFQGSEKIQKVSQILSSKLQILIDEHNETNSPKIDDTVVHACSEKLLR 429
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 396 EYNCLKKLHVASPARDGADFN 334
E + LK+LH+A+P R A FN
Sbjct: 491 EPSVLKQLHLANPNRQAASFN 511
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 413 ILALLRAYRPRSINPLDEVPSKLRAV 490
I +L +Y P+ INP +E+P R +
Sbjct: 9 IYKVLYSYEPQEINPGEEIPENEREI 34
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 238 NSCDQLLIDHAELLLIIAF-LVTEFLLNVGVDCFGQISAFL-RWQQFLDIAVQYLGHF*N 65
N C+ LL ++L + F +V LLN+ + F W + LD+ Y H +
Sbjct: 228 NECEPLL--KKDILSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRILDVHTSYWKHMFS 285
Query: 64 LLGNYQI 44
L G +QI
Sbjct: 286 LFG-FQI 291
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 32 EKWNDLVVPEKI--LEVTQILYSNIQKLLPTQESRDLAEAIHSYV 160
EK ++ +P+K L++ ++L S + + + DLA H+YV
Sbjct: 439 EKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYV 483
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 279 WHYQHDARLCELLRCSKLN*SPLRLLLERQRGASSS 386
W+++H LC L+ ++ LL QR A S
Sbjct: 194 WYFEHHTELCLLIHHAEARAQEANDLLNEQRNALQS 229
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 132 SLLSCVGNSFWILLYSIWVTSRIFSGTTR 46
S L+CV +W L +IW + ++ SG+ R
Sbjct: 55 SNLTCVNIGYWQLFLNIWKSDKL-SGSFR 82
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 381 SSSCTPVISLTSWPFSEPTD 440
S +C+P + T WP ++P+D
Sbjct: 210 SYACSPGMLKTQWPSTQPSD 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,742
Number of Sequences: 5004
Number of extensions: 40154
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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