Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20098
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 31 0.84
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.1
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 28 4.5
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 4.5
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 5.9
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 28 5.9
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 27 7.8
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 27 7.8
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 30.7 bits (66), Expect = 0.84
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +2
Query: 119 QESRDLAEAIHSYVQKK---LRNQKCDDEKELRVVYQKLITAVTSLVQS*GLS*MNL-AL 286
+ S++L+E I QK+ L + CD E+EL+ + +++ A TSL + LS AL
Sbjct: 499 ESSKELSEDIKKLKQKRIAELDKEICDAEQELKDLNEQIKRAETSLEERKKLSSSACQAL 558
Query: 287 STRRPTLRTSSLLQAQLKSAPS 352
S + + R++ ++ + SA S
Sbjct: 559 SDEKGSPRSTLVVVGHIDSAES 580
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 383 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 493
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 330 AWSSEEVRKVGRRVDNAKFIQLSP 259
+W+SEE RK+ + D F+Q P
Sbjct: 487 SWASEEARKIAQEEDGKLFLQKGP 510
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 383 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 481
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +2
Query: 2 SALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLL 112
++ P L++ +EK+NDL EK+ E+ ++ ++ + L
Sbjct: 796 ASFPSLASFEEKFNDLTTTEKVEELKNLVAPHMLRRL 832
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +2
Query: 317 SLLQAQLKSAPSLAGEATWSFFKQLYSGDFP--------DILALLRAYRPRSINPLDEVP 472
S L A SA L G+A L SG+FP I A +P ++ +DE
Sbjct: 272 SSLAAAAASAV-LCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEAV 330
Query: 473 SKLRAVVXNG 502
KL++V+ NG
Sbjct: 331 GKLKSVLDNG 340
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 283 IINTTPDFANFFAAPSSIKVRSVSCW 360
+I T P F +P+SIK + +SCW
Sbjct: 464 MIRTEPFSLKSFLSPNSIKDQKMSCW 489
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 383 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 493
++L +GDF + LL+ Y P +I+ L + ++LR V
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSV 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,253,860
Number of Sequences: 37544
Number of extensions: 272750
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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