Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20098
         (563 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ...    48   7e-06
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA...    48   9e-06
AY069603-1|AAL39748.2| 1876|Drosophila melanogaster LD36178p pro...    31   0.81 
AF172995-1|AAD48498.1| 1847|Drosophila melanogaster gigas protei...    31   0.81 
AE014296-3279|AAF49066.1| 1847|Drosophila melanogaster CG6975-PA...    31   0.81 

>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
            acid-bindingglycoprotein protein.
          Length = 3351

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +2

Query: 2    SALPILSNLKEKWNDLV----VPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKK 169
            ++LP   +++ ++ND V    + EK  E+T  L+  I  L  T E+ +  + +H Y+  K
Sbjct: 2627 ASLPSFESIRNEFNDKVKVLKLIEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAK 2686

Query: 170  LRNQKCDDEKELRVVYQKLITAVTSL 247
            L+ +  D+EK +  + Q LI AV S+
Sbjct: 2687 LKQEHIDNEKYIEELGQLLIKAVRSI 2712



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 508  LFTFDGRHLTFPGNWRYV 561
            +FTFDG +  +PGN +Y+
Sbjct: 2796 IFTFDGLNFAYPGNCKYI 2813


>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
            protein.
          Length = 3351

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +2

Query: 2    SALPILSNLKEKWNDLV----VPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKK 169
            ++LP   +++ ++ND V    + EK  E+T  L+  I  L  T E+ +  + +H Y+  K
Sbjct: 2627 ASLPSFESIRNEFNDKVKVLKLFEKATELTNSLFDQINILPQTPETSEFLQKLHDYLIAK 2686

Query: 170  LRNQKCDDEKELRVVYQKLITAVTSL 247
            L+ +  D+EK +  + Q LI AV S+
Sbjct: 2687 LKQEHIDNEKYIEELGQLLIKAVRSI 2712



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 508  LFTFDGRHLTFPGNWRYV 561
            +FTFDG +  +PGN +Y+
Sbjct: 2796 IFTFDGLNFAYPGNCKYI 2813


>AY069603-1|AAL39748.2| 1876|Drosophila melanogaster LD36178p
           protein.
          Length = 1876

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +2

Query: 2   SALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLLPTQ 121
           SA+ IL NL    NDL+VP K  E  QI  S  ++L+ TQ
Sbjct: 92  SAITILFNLT---NDLIVPNKPAETRQIALSFYKRLIHTQ 128


>AF172995-1|AAD48498.1| 1847|Drosophila melanogaster gigas protein
           protein.
          Length = 1847

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +2

Query: 2   SALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLLPTQ 121
           SA+ IL NL    NDL+VP K  E  QI  S  ++L+ TQ
Sbjct: 63  SAITILLNLT---NDLIVPNKPAETRQIALSFYKRLIHTQ 99


>AE014296-3279|AAF49066.1| 1847|Drosophila melanogaster CG6975-PA
           protein.
          Length = 1847

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +2

Query: 2   SALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKLLPTQ 121
           SA+ IL NL    NDL+VP K  E  QI  S  ++L+ TQ
Sbjct: 63  SAITILFNLT---NDLIVPNKPAETRQIALSFYKRLIHTQ 99


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,641,810
Number of Sequences: 53049
Number of extensions: 454671
Number of successful extensions: 1814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)