Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20098
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    27   9.3  

>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 89  YSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVV 214
           Y +I KLL   + +D AE  + YV+  L+ QK DD+  L V+
Sbjct: 151 YPHISKLL--YKPKDGAEESYFYVKSSLQFQKSDDKHVLNVL 190


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 59   EKILEVTQILYSNIQKL-LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITA 235
            E  L+      S + KL LP    R   E +    +K +++ +C+  ++ + +Y+ ++  
Sbjct: 1174 EADLKAGSAAISQLHKLVLPFVMRRLKTEVLKELPEKNVQDYECELTEDQKEIYRFVVDR 1233

Query: 236  VTSLVQS*GLS*MNLALSTRRPTLRT 313
             TS  +  GLS +   ++ R+ T  T
Sbjct: 1234 CTSSQEDVGLSSLVTLITLRKLTDHT 1259


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
            F15D4.1 protein.
          Length = 1529

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 59   EKILEVTQILYSNIQKL-LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITA 235
            E  L+      S + KL LP    R   E +    +K +++ +C+  ++ + +Y+ ++  
Sbjct: 1174 EADLKAGSAAISQLHKLVLPFVMRRLKTEVLKELPEKNVQDYECELTEDQKEIYRFVVDR 1233

Query: 236  VTSLVQS*GLS*MNLALSTRRPTLRT 313
             TS  +  GLS +   ++ R+ T  T
Sbjct: 1234 CTSSQEDVGLSSLVTLITLRKLTDHT 1259


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 398 GDFPDILALLRAYRPRSINPLDEVPSKLRAVVXNGQHSSRSTVATSPSQETGAT 559
           G  P+IL  + A R R+ N +     + + +V NG+  +    A S    TGAT
Sbjct: 622 GLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGFTGAT 675


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 110 LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSL 247
           +PT E+R    A+ + V   +  +K DD  E++ V +KL+ A+  +
Sbjct: 335 MPTIENRTKVPAMQA-VLSSIWTRKPDDRPEMQKVLEKLVAALVPI 379


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 110 LPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSL 247
           +PT E+R    A+ + V   +  +K DD  E++ V +KL+ A+  +
Sbjct: 378 MPTIENRTKVPAMQA-VLSSIWTRKPDDRPEMQKVLEKLVAALVPI 422


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 301 DFANFFAAPSSIKVRSVSCWRGNVELLQAVV 393
           +F    A P+S+++R V+  RGN  L Q V+
Sbjct: 69  NFTKLTATPTSVEIRVVASDRGNNFLYQTVI 99


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = +2

Query: 302 TLRTSSLLQAQLKSAPSLAGEATWSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 481
           T+ TS   Q Q++    L  E    ++K   +  F   +  ++   P +I+ L  V   +
Sbjct: 197 TINTSCTFQKQMEDR--LNDEHRRRYWKMSVN-QFDSFMEKVQETTPITISGLPFVDDGI 253

Query: 482 RAVVXNGQHSSRSTVATS 535
             V  +GQ+SSRS+V +S
Sbjct: 254 YGVQESGQNSSRSSVYSS 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,355
Number of Sequences: 27780
Number of extensions: 224592
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)