Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20098
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.9  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   6.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   6.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 366 ASPARDGADFN*AWSSEEVRKVGRRVDNAKFI 271
           ASPA    D +  +    VR++ + +D+A+FI
Sbjct: 491 ASPAYVHEDVSPTFEKPLVREIEKTIDDARFI 522


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   ALPILSNLKEKWNDLVVPEKILEVTQILYSNIQKL 109
           A+PI++ L E+  DLVV     E   ++ S  ++L
Sbjct: 251 AVPIINTLLERSVDLVVTSTYCEPQVVIVSPTREL 285


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 169 FLLNVGVDCFGQISAFLRWQ 110
           F +N+G++C  +I   LR++
Sbjct: 464 FRINLGIECGYEIKKLLRYK 483


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +2

Query: 128 RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 229
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 49  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 82


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +2

Query: 128 RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 229
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 32  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,567
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)