Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20097
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   1.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.3  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   3.1  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   5.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 184 SLRSPTESKARFHAGCVPKQSIYMTGILYVPTRRNIQMPKNRKQ 315
           S +SP    ARF++  +     Y    L  P    +  PK+ K+
Sbjct: 79  SYQSPQTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEKE 122


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 255 DWNSVRADKKKHSDAEEQETISHYLNRNK 341
           D ++ + DKKK    +E+ T    LN+ K
Sbjct: 255 DEDTKKEDKKKKKTIKEKYTEDEELNKTK 283


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 321  HYLNRNKEYLETYILE 368
            HYLNRN+E     ++E
Sbjct: 1186 HYLNRNEETFWNELIE 1201


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 321  HYLNRNKEYLETYILE 368
            HYLNRN+E     ++E
Sbjct: 1186 HYLNRNEETFWNELIE 1201


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 235 PKQSIYMTGILYVPTRRNIQ 294
           P+QSI ++G +  PT+  IQ
Sbjct: 26  PQQSIIVSGSITQPTKTVIQ 45


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 221 WNRALLSVGDLNEAGVPE 168
           WN    SVG  NE  +P+
Sbjct: 17  WNEGPNSVGVSNEVSLPQ 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,257
Number of Sequences: 336
Number of extensions: 1921
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)