Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20097
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 29 0.31
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 1.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 2.2
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 2.9
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 3.8
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 3.8
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 5.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 5.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 5.0
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 24 6.7
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 24 6.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 8.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 8.8
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 0.31
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 13 VLARDMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDG-RSPQLLPPIGKAEIGFSGTPASL 189
VL +D++ G+NA + G K ++ S + + +G ++P++ P K E T ++L
Sbjct: 121 VLNKDVNNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSAL 180
Query: 190 RSPTESKAR 216
SK +
Sbjct: 181 PKKEASKKK 189
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 275 GTYRIPVMYIDCFGTQPAWNR 213
G+ R+P Y+ C G +P++ R
Sbjct: 164 GSIRLPAAYVGCVGFKPSFGR 184
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 225 WLRSKAVNIHDWNSVRADKKKHSDAEEQETISHYLNRNKE 344
WL H WN V D ++ EE+++ ++NR K+
Sbjct: 1191 WLHDLDAFEHAWNKVMDDIQREM-LEEEQSSRDFVNRTKK 1229
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 236 GTQPAWNRALLSVGDLNEAGVPEKPISAFPIG 141
GT+ R + S+G +NE EKP + P+G
Sbjct: 553 GTENQSPRPVTSLGFVNETFFEEKPKAPLPLG 584
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 3.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 266 CTCRQEETFRCRRTGN 313
C C Q+ET RC + N
Sbjct: 299 CKCLQKETIRCNKKSN 314
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 3.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 133 LLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQS 246
L+ I +A G P L + T+SKAR H C S
Sbjct: 216 LVTLIMRAYDGALSAPGQLYTVTDSKARVHLECFGSSS 253
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 5.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 237 WNATSVESSFTLSR 196
WNATSVE F L R
Sbjct: 64 WNATSVERRFQLKR 77
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 5.0
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = +2
Query: 44 MRALRMEIRTXPEVVILR---SSLRHRMDDLLNF------YHQLGRQKLVSQALRLR*GP 196
+RA + VV+++ S LR R+D +LNF YH R+ + + A
Sbjct: 107 LRAFKKGTLESGSVVLIQKQHSKLRQRLDSILNFSRLQPAYHIPARKSVPTDAYTPMVSY 166
Query: 197 R-LRVKLDSTLVAF 235
R L+ KL +TL+ F
Sbjct: 167 RKLKSKLKTTLLDF 180
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 5.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 85 SNTPIQSKTSDGRSPQLLPPIGKA 156
SN P GRS LPP+G A
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNA 409
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 178 PASLRSPTESKARFHAGCVPKQSIYMTGILYVP 276
PA+ R E++AR A VP++S YVP
Sbjct: 39 PATTRPMAEARARPGATAVPRRSPTSPQSAYVP 71
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 85 SNTPIQSKTSDGRSPQLLPPIGKAEIGFSGT 177
S + IQ KT+D L+ +GK E GT
Sbjct: 635 SRSLIQKKTTDETVGSLIEKVGKLEYEVQGT 665
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 368 FQYICFQILLIPIQVMTDCF 309
FQ +C+QI+ + VM CF
Sbjct: 1228 FQNVCYQIMSGNVPVMDFCF 1247
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 8.8
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 64 DKDXSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQ 243
+ D NTPI S + + L I +E P+ L+ ESK R G V KQ
Sbjct: 546 NSDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESK-RLSTG-VQKQ 603
Query: 244 S 246
S
Sbjct: 604 S 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,317
Number of Sequences: 5004
Number of extensions: 34634
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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