Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20097
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352 31 0.38
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146... 30 0.50
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 1.5
06_01_0663 + 4848582-4849052 28 2.0
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 28 2.7
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 28 2.7
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 27 3.6
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 27 3.6
01_05_0096 + 18073573-18073839,18073890-18074294 27 3.6
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 4.7
04_04_0972 - 29804792-29805709 27 6.2
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 26 8.2
11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451 26 8.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 26 8.2
>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
Length = 563
Score = 30.7 bits (66), Expect = 0.38
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 262 FQSCILTALERNQRGIELYSQSGTSTKPECLRNQFLPSQLVVEVEEIVHP 113
++S +LT L R Q IE + S K ECLRN FL + + +E+ P
Sbjct: 389 WKSYVLTLLTRLQLNIE---EKSKSYKDECLRNVFLMNNAMYVLEKARSP 435
>02_04_0027 -
19014033-19014127,19014219-19014315,19014560-19014673,
19014759-19014923,19015169-19015306,19015402-19015478,
19015572-19015686,19015756-19015861,19016182-19016243,
19016407-19016472,19016628-19016810,19017359-19017415,
19017848-19017896,19017983-19018131,19019203-19019250,
19020061-19020201
Length = 553
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 275 GTYRIP--VMYIDCFGTQPAWNRALLSVGDLNEAGVPEKPISAFPIGGR 135
G R+P + YID G A+ RA+L VGD+ + P K ++ G R
Sbjct: 329 GNPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSWGFGAR 377
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 19 ARDMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDGRSPQL--LPPIGKAEIGFSGTPASLR 192
A D NAG+ D+ S ++++ ++ S G SP+L LPP+ + G P R
Sbjct: 194 AMDYRYVGNAGIGRMDEKSSETTSSGDEASRSTGGSPELRPLPPLLARQCG----PMGAR 249
Query: 193 SP 198
SP
Sbjct: 250 SP 251
>06_01_0663 + 4848582-4849052
Length = 156
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 163 GFSGTPASLRSPTESKARFHAGCVPKQSI--YMTGILYV-PTRRNIQMPK 303
GF+G AS SPT R+H + S+ MTG+L P + I MPK
Sbjct: 94 GFAGGRASTTSPTTPLDRYHRIIIATASLLRIMTGMLPASPKQLLIIMPK 143
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 16 LARDMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRS 195
+A + S+A A S + P + SP ++PP A+ G+P+ S
Sbjct: 45 VAAAAAAASSAAAAAAQAQASSEGSPPASELSPGSLSPVMIPPPRHADHLAPGSPSPAAS 104
Query: 196 PTE 204
P+E
Sbjct: 105 PSE 107
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 241 QSIYMTGILYVPTRRNIQMPKNRKQ 315
Q IY+ G LY PT N +M +N ++
Sbjct: 289 QYIYIPGYLYFPTENNRRMKENSRE 313
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 92 LRSSLRHRMDDLLNFYHQLGRQKLVSQAL 178
L+ +R R+D L F+H L +L +Q L
Sbjct: 710 LKLEVRDRVDQLFKFFHNLSSMRLRNQTL 738
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 112 SDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQSIY 252
S S QL PP + E+ S TP+++ + E +A A PK+ +
Sbjct: 211 SSSSSKQLAPPTPRLELQLSPTPSTM-ADVEVEAEVAAAGAPKKRTF 256
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 255 DWNSVRADKKKHSDAEEQETISHYLNR 335
DW+ + A+ KK + EE +T + +NR
Sbjct: 143 DWDKLEAEVKKEEEEEEVDTATPVVNR 169
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 316 IVSCSSASECFFLSARTEFQSCILTALERNQRGIELYSQSGTSTKPEC 173
++ CS A +C F + F + T + + RG Y + K +C
Sbjct: 186 VLDCSGAGDCVFGYPKDAFNHIVNTGVSLDSRGKPPYYPPYEAQKKQC 233
>04_04_0972 - 29804792-29805709
Length = 305
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 253 CILTALERNQRGIELYSQSGTSTKPECLRNQFLPSQLVVEVEEIVHPMS*TGS 95
C+ T R QRG+ + S SG T LR P+ VV + +S +GS
Sbjct: 125 CVSTYARRRQRGVCVLSGSGVVTN-VTLRQPSAPAGAVVSLHGRFEILSLSGS 176
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 16 LARDMSEGSNAGLAYGDKDXSRSSNTPIQSKTSDGRSPQLL 138
LARD+ A +GDK + N Q +T GR+P L+
Sbjct: 865 LARDIGRSFGAASIHGDKSQAERDNVLNQFRT--GRAPILV 903
>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
Length = 735
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 312 FPVLRHLNVSSCRHVQNS 259
FP+LR LN+S C+ V N+
Sbjct: 400 FPLLRVLNLSGCQKVDNN 417
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 108 DIGWTISSTSTTNWEGRNWFL--RHSGFVEV 194
D+ +++ST+ ++W+ NW++ SG V+V
Sbjct: 3468 DLILSVASTTNSDWQDTNWYVTGHQSGAVKV 3498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,973
Number of Sequences: 37544
Number of extensions: 223026
Number of successful extensions: 720
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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