Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20097
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.29 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 157 EIGFSGTPASLRSPTESKARFHAGCVPKQSIY 252
           E+ +SGT  S     E+K+RF +G   +Q+I+
Sbjct: 330 EVPYSGTLISHYEDGETKSRFISGIRSEQTIF 361


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 221 WNRALLSVGDLNEAGVPE 168
           WN  L SVG  NE  +P+
Sbjct: 170 WNAGLQSVGISNEVELPQ 187


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 76  SRSSNTPIQSKTSDGRSPQLLPPIGKAEIG 165
           S  +N P  +K SD + P       KAE G
Sbjct: 870 SHENNQPTMNKCSDRKRPASQATSVKAEPG 899


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 228 LRSKAVNIHDWNSVRADKKKHSDAEEQETIS 320
           L   AVN   W +    K K  ++++++ IS
Sbjct: 320 LEYAAVNYTYWGARAKKKSKKKESDDKKVIS 350


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 221 WNRALLSVGDLNEAGVPE 168
           WN    SVG  NE  +P+
Sbjct: 170 WNEGPNSVGVSNEVSLPQ 187


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 221 WNRALLSVGDLNEAGVPE 168
           WN    SVG  NE  +P+
Sbjct: 109 WNEGPNSVGVSNEVSLPQ 126


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 372 PIPIYMFPNTPYSDSGND 319
           P+P+ + PN P S    D
Sbjct: 226 PLPVRVLPNFPSSGHWQD 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,830
Number of Sequences: 438
Number of extensions: 2294
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)