Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20097
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 1.3
At3g22270.1 68416.m02815 expressed protein 28 1.7
At4g14990.1 68417.m02303 expressed protein 28 2.3
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 2.3
At4g26950.1 68417.m03878 expressed protein contains Pfam profile... 27 3.0
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 27 3.0
At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical ... 27 5.3
At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical ... 27 5.3
At5g07300.1 68418.m00834 copine, putative strong similarity to B... 26 7.0
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 26 7.0
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 26 7.0
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 26 7.0
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 26 9.2
At5g27440.1 68418.m03275 expressed protein 26 9.2
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf... 26 9.2
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 26 9.2
At2g32520.1 68415.m03973 dienelactone hydrolase family protein l... 26 9.2
At1g02450.1 68414.m00193 NPR1/NIM1-interacting protein 1 (NIMIN-... 26 9.2
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 88 NTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSP----TESKARFHAGCVPKQSIYM 255
++P Q + GRSP L P G+ G + P+S + P A F + P YM
Sbjct: 230 SSPSQIHSGGGRSPPLPLPPGQFTAGNASFPSSTQPPPGQYMAGNASFPSSTPPPPGQYM 289
Query: 256 TG 261
G
Sbjct: 290 AG 291
>At3g22270.1 68416.m02815 expressed protein
Length = 782
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 41 AMRALRMEIRTXPEVVILRSSLRHRMDDLLNFYHQLGRQ 157
A L + I+ +LR+SLRH DD N+ GR+
Sbjct: 721 AADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRK 759
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 41 AMRALRMEIRTXPEVVILRSSLRHRMDDLLNFYHQLGR 154
A L + I+ +LR+SLRH +D NF +GR
Sbjct: 723 AADVLELAIKREMPAELLRASLRHTNEDQRNFLLNVGR 760
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 275 RQEETFRCRRTGNNQSLPES 334
R E+T RC+R NN S+ ES
Sbjct: 234 RPEKTKRCKRNNNNNSIEES 253
>At4g26950.1 68417.m03878 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 144
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 219 PRWLRSKAVNIHDWNSVRADK-KKHSDAEEQETISHYLNRNKEYLETYILE 368
P +S VN+ DW+ V+ K KK D E ++L R++ + ++E
Sbjct: 68 PMRQQSVPVNVPDWSMVQRKKTKKVVDDENVSPEEYFLRRSRSSSSSSVME 118
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 27.5 bits (58), Expect = 3.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 91 YYYFWXCPYLHTQGPHCSLQ 32
+Y W CP+ PHC Q
Sbjct: 233 HYITWFCPFQFINSPHCKSQ 252
>At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical to
BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
Pfam profile PF00168: C2 domain
Length = 578
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 275 GTYRIP--VMYIDCFGTQPAWNRALLSVGDLNEAGVPEKPISAFPIGGR 135
G R+P + YID G A+ RA++ VG++ + +K A+ G R
Sbjct: 353 GNPRLPDSLHYIDPSGRLNAYQRAIMDVGEVLQFYDSDKRFPAWGFGAR 401
>At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical to
BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
Pfam profile PF00168: C2 domain
Length = 578
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 275 GTYRIP--VMYIDCFGTQPAWNRALLSVGDLNEAGVPEKPISAFPIGGR 135
G R+P + YID G A+ RA++ VG++ + +K A+ G R
Sbjct: 353 GNPRLPDSLHYIDPSGRLNAYQRAIMDVGEVLQFYDSDKRFPAWGFGAR 401
>At5g07300.1 68418.m00834 copine, putative strong similarity to
BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
Pfam profile PF00168: C2 domain
Length = 586
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 275 GTYRIP--VMYIDCFGTQPAWNRALLSVGDLNEAGVPEKPISAFPIGGR 135
G R+P + YID G A+ RA++ VG++ + +K A+ G R
Sbjct: 356 GNPRLPDSLHYIDPTGRLNAYQRAIVEVGEVLQFYDSDKRFPAWGFGAR 404
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 115 DGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPKQS-IYMTGILYVPTRRNI 291
+G S IG+ + AS R+ +K A C+PKQS +Y +++ T NI
Sbjct: 315 EGNSADFASDIGELMETYLAEIASDRNINFAKFIGFAECIPKQSRMYRAIDIFLKTHPNI 374
Query: 292 QMPKNRK 312
+ +K
Sbjct: 375 SEVEKKK 381
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 28 MSEGSNAGLAYGDKDXSRSSNTPI-QSKTSDGRSPQLLPPIGKAE-IGFS 171
++ G NA L D S ++ I Q+ +S G S PP GKA GF+
Sbjct: 273 LAMGMNASLHTTMSDPSNLNHHSIGQASSSSGPSSSTAPPSGKASAFGFN 322
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 28 MSEGSNAGLAYGDKDXSRSSNTPI-QSKTSDGRSPQLLPPIGKAE-IGFS 171
++ G NA L D S ++ I Q+ +S G S PP GKA GF+
Sbjct: 297 LAMGMNASLHTTMSDPSNLNHHSIGQASSSSGPSSSTAPPSGKASAFGFN 346
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -2
Query: 290 MFLLVGTYRIPVMYIDCFGTQPAWNRALLSVGDLNEAGVPEKPIS 156
M L+ T +P+ +D G WN V L KP+S
Sbjct: 608 MVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVS 652
>At5g27440.1 68418.m03275 expressed protein
Length = 216
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 280 LSARTEFQSCILTALERNQR 221
+S RT+FQS +L A +R QR
Sbjct: 34 ISHRTQFQSLVLCAKKRKQR 53
>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 292
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 253 CILTALERNQRGIELYSQSGTST 185
C+ T R QRGI + S SGT T
Sbjct: 125 CVATYARRRQRGICVLSGSGTVT 147
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 LARDMSEGSNAGLAYGDKDXSRS-SNTPIQSKTSDGRSPQLLPP 144
L R SE N G A + + S S +P+ S+ G +PQ+ PP
Sbjct: 280 LERKFSE-QNIGAAPPSYEEAVSESRSPVYSERDGGETPQVAPP 322
>At2g32520.1 68415.m03973 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Pseudomonas
resinovorans] GI:13094163; contains Pfam profile
PF01738: Dienelactone hydrolase family
Length = 239
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 133 LLPPIGKAEIGFSGTPAS-LRSPTESKARFHA 225
+L P A +GF GTP+S L P ++KA A
Sbjct: 125 VLVPEVDAVVGFYGTPSSELADPAQAKAPIQA 156
>At1g02450.1 68414.m00193 NPR1/NIM1-interacting protein 1 (NIMIN-1)
identical to NIMIN-1 protein [Arabidopsis thaliana]
gi|12057154|emb|CAC19844; identical to cDNA NIMIN-1
protein (nimin-1 gene)GI:12057153
Length = 142
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 234 SKAVNIHDWNSVRADKKKHSDAEEQE--TISHYLNRNKEYLE 353
SK N+ ++R DK+ D EE+E I + K Y E
Sbjct: 17 SKDENVESKETIRVDKRVREDEEEEEEKKIDTFFKLIKHYQE 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,817,858
Number of Sequences: 28952
Number of extensions: 179518
Number of successful extensions: 530
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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