Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20096
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2; ...    39   0.14 
UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|R...    35   2.3  
UniRef50_UPI000038D597 Cluster: COG2319: FOG: WD40 repeat; n=2; ...    33   5.4  
UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter vio...    33   5.4  
UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4; Bifidobacter...    33   7.1  
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n...    33   9.4  
UniRef50_A2YXR8 Cluster: Putative uncharacterized protein; n=7; ...    33   9.4  

>UniRef50_Q4DNJ1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 790

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -2

Query: 343 PDNSQSSDTSGSAADPVR--DTCWCM-YEAYSRAHIQDMVSQIPPSSIR*YSTQDDSRLF 173
           PD+ QS+DT        R  DT     +++  +AH QD++S  PPSS    + ++ S L 
Sbjct: 180 PDSKQSADTQNHLLPQNRHYDTGNSKAFQSQIQAHKQDVISLSPPSSAG--TRRNSSVLL 237

Query: 172 SGRQRLRKTQLRINATPLVTQSRFSQVRCAELSLHQCQIKYE 47
             R   R+    +   P+++QS   + R  E+ + +  +K E
Sbjct: 238 HDRHDNRRNTATLADVPIISQSCTPESRYMEIVIEKIAVKNE 279


>UniRef50_Q7ND80 Cluster: WD-repeat protein; n=5; Cyanobacteria|Rep:
            WD-repeat protein - Gloeobacter violaceus
          Length = 1188

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 342  RTILNHLIHQAVQQTLSGTRVGVCTRPILEHTSRIWSVRFRQAPSGNILLKTTADCSLGG 163
            RT+++    Q V+  L     G C R +  HTS++WSV F  +P G  ++  + D ++  
Sbjct: 1086 RTVVSSSHDQTVR--LWDAATGECLRTLTGHTSQVWSVAF--SPDGRTVISGSQDETIRL 1141

Query: 162  RDS--GKP 145
             DS  GKP
Sbjct: 1142 WDSHTGKP 1149


>UniRef50_UPI000038D597 Cluster: COG2319: FOG: WD40 repeat; n=2;
           Nostoc punctiforme PCC 73102|Rep: COG2319: FOG: WD40
           repeat - Nostoc punctiforme PCC 73102
          Length = 1174

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 279 GVCTRPILEHTSRIWSVRFRQAPSGNILLKTTADCSL 169
           G   + + EHT+R+WSV F+ A    +L   +AD S+
Sbjct: 874 GTLVQTLREHTNRVWSVAFQPASQHPLLASGSADYSI 910


>UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter
           violaceus|Rep: WD-repeat protein - Gloeobacter violaceus
          Length = 1183

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -3

Query: 288 TRVGVCTRPILEHTSRIWSVRFRQAPSGNILLKTTAD 178
           T  G CTR +  HT  IWSV F  AP G  L   +AD
Sbjct: 887 TEDGRCTRVLSGHTHPIWSVAF--APGGATLASASAD 921


>UniRef50_Q2GWG6 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 470

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 338 VRKKVCVKMTSVHPCRHFLDSITCSHKVCTKIWRSIYLLKF 460
           V  + CV  T +HP      S +C H+ C    RS++   F
Sbjct: 190 VVSRTCVACTEIHPVTRLAKSPSCGHEYCQDCLRSLFTSSF 230


>UniRef50_Q8G4F7 Cluster: DNA gyrase subunit B; n=4;
           Bifidobacterium|Rep: DNA gyrase subunit B -
           Bifidobacterium longum
          Length = 772

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 253 LENRPRTYTNTCPGQGLLHCLMYQMIENCPEESL 354
           +  RP  Y  T   QGL+HCL +++I+N  +E+L
Sbjct: 20  VRKRPGMYIGTTDSQGLMHCL-WEIIDNSVDEAL 52


>UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3418

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -1

Query: 401  LNPESDDTGEQTSSLRRLSSGQFSII*YIRQCSRPCPGHVLVYVRGLFSSTHPGYGQSDS 222
            +NP +D+     S L R+   + S + Y++QC    P H L   R      +       +
Sbjct: 1278 INPTNDECQYYLSDLMRIIGKKDSQVHYLKQCLTLNPTHELALQR-----KYELQNSCQN 1332

Query: 221  AKLHQVIFYSRRQQTVLWE-AETPEN 147
             +L Q IFY    Q   WE  E  EN
Sbjct: 1333 EQLAQTIFYEELDQHNNWEYVEQEEN 1358


>UniRef50_A2YXR8 Cluster: Putative uncharacterized protein; n=7;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 583

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 513 PLVNMSTLLECGF-SSILQIYTHGPRYAHEKQLHKLPVAVATTSTPKSGS 659
           PL N  +LL+ GF      +Y  GP   H +++ ++ V V   +TP   S
Sbjct: 79  PLGNPFSLLDQGFLERAAAVYGEGPHITHPREVRRIDVEVKDNNTPAGSS 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,986,775
Number of Sequences: 1657284
Number of extensions: 17398541
Number of successful extensions: 43630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43619
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)