Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20096
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   2.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   2.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   2.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   4.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   8.2  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   8.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   8.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.2  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 601 FSCAYRGPCV*IWSIDEKPHSSNVL 527
           F C  +GPC+ I+ + E  H S+++
Sbjct: 30  FLCCAQGPCLRIYDVSESRHESDLI 54


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +2

Query: 212 GAWRNLTDHILDVCSRIGLVHTPTRVPDRVCCTA*CIR*LRIVRKKVCVKMTSVHPCRHF 391
           G+WR    ++LD C  +  +       +   C A C   LR + K  CVK  S    R  
Sbjct: 113 GSWRWYDQYMLDCCRSLSDIEKDGVTLEEFSCLANC-NGLRTITK--CVKDVSFDEFRK- 168

Query: 392 LDSITCS 412
            D I+CS
Sbjct: 169 -DVISCS 174


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +1

Query: 211  WSLAESD*PYPGCVLENRPRTYTNTCPGQGLLHCLMYQMIE---NCPEESLRKDDVCSPV 381
            + L  SD  +   V+    + Y    P   LL   M+++ E   N P +S    ++C  +
Sbjct: 1127 YDLLSSDEEFDVHVIAGLLKLYLRNLP-TNLLDTSMHKLFELLPNVPNDSAALGELCDVI 1185

Query: 382  SSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRN 483
            S L   N+    S+   L   +  E   +  +RN
Sbjct: 1186 SKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRN 1219


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 516 LVNMSTLLECGFSSILQIYTHGPRYAHEKQLHKLPVAVATTSTP---KSGSINVVRLPEV 686
           ++ + ++L  G+S ++ I+T     +  K LHKL      +  P    +  + ++   E 
Sbjct: 566 ILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELET 625

Query: 687 QTP 695
           QTP
Sbjct: 626 QTP 628


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 298 GLLHCLMYQMIENCPEESLRKDDVCSPV--SSLSGFNYMFSQSMYEDLEEH 444
           G+ HC M    E     S+ K +V + V  SSL  F+     S+Y D+++H
Sbjct: 785 GITHCSMND--EGYTTISIPKANVLNSVYNSSLKNFSSSNDTSVYHDVQDH 833


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 536 ARMWLFVYTPNLHAWPAV 589
           A  W +V  PN H WP V
Sbjct: 438 APFWKYVAVPNPHDWPQV 455


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 53  FNLALVQAEFGTPYLRKSRLCHQWSCINTKLGFP-----ESLPPREQSAVVLSRILPDGA 217
           +NLA++   FG P++    +   +S I+T L        E  PP E + +    I+ D  
Sbjct: 250 YNLAILAKHFGKPFI----VAAPFSSIDTSLASGSQITIEQRPPIEMTTIT-GPIITDSN 304

Query: 218 WRNLTD 235
            RNL D
Sbjct: 305 SRNLED 310


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 271 TYTNTCPGQGLLHCLMYQMIEN 336
           TYT   PGQ  L  ++YQ I +
Sbjct: 206 TYTRRGPGQAYLRSILYQCIND 227


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 95  LRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILDVCSRI-GLV 271
           L K R+ +Q+  +    G   +      +A+ LS+   D  W+ L+  +  VC  I   +
Sbjct: 244 LSKGRIENQFGQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVCLVIMAHL 303

Query: 272 HTPTRVPDRV 301
           H   ++P  +
Sbjct: 304 HVDVQIPPNI 313


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 89  PYLRKSRLCHQWSCINTKLGFPESLPPR 172
           P  R S +C     +NTK  F E LPPR
Sbjct: 2   PLGRSSWICCAKYFVNTKSRFNEILPPR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,062
Number of Sequences: 5004
Number of extensions: 74929
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)