Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20096
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 33 0.30
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 29 3.7
11_06_0754 - 26935647-26937780,26940890-26941827 28 6.5
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 28 6.5
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 28 6.5
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 28 6.5
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 28 8.6
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 28 8.6
03_04_0137 - 17617385-17617642,17617850-17618007,17618964-17619000 28 8.6
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 513 PLVNMSTLLECGF-SSILQIYTHGPRYAHEKQLHKLPVAVATTSTPKSGS 659
PL N +LL+ GF +Y GP H +++ ++ V V +TP S
Sbjct: 79 PLGNPFSLLDQGFLERAAAVYGEGPHITHPREVRRIDVEVKDNNTPAGSS 128
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 658 DPDLGVDVVATATGSLCSCFSCAYRGP 578
D D GVDV A GSLC S +RGP
Sbjct: 46 DTDAGVDVDARLVGSLCRVLS-DFRGP 71
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 86 TPYLRKSRLCHQWSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHI 241
T L KSR QW +N LG+ P + + ++L D ++ NL++H+
Sbjct: 416 TSILEKSRKMEQWGYVNKSLGYNLMKNPTLEG---IKQVL-DLSYNNLSEHL 463
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 252 HTSRIWSVRFRQAPSGNILLKTTADCSLGGRD--SGKPNFVLMQLH 121
H +VRF + SGN++L +ADCS+ D +GKP L H
Sbjct: 50 HKESCRAVRFVE--SGNVILTGSADCSILASDVETGKPIARLEDAH 93
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 615 LPVAVATTSTPKSGSINVVRLPEVQTPDVDITN 713
LP+ + ++ TPK G ++ L ++++PDV + +
Sbjct: 406 LPLPLPSSETPKRGVSSISILEQLESPDVSVNS 438
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 164 PPREQSAVVLSRILPDGAWRNLTDHILDVCSR 259
P EQ A +S + P G+W NL D V SR
Sbjct: 709 PVLEQGATSVSAMFPPGSWYNLFDTTKVVVSR 740
>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 343 EESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEH---LPVEIRPE 468
E+S + DD+C +S++ G + + S ED EH L +EI E
Sbjct: 1097 EKSNQGDDLCKNLSTVKGESPLASNFHVEDAAEHGSMLQIEINAE 1141
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/84 (20%), Positives = 40/84 (47%)
Frame = -2
Query: 475 KTIQDEFQQVNAPPNLRTYFVRTCN*IQKVTTRVNRRHLYADFLPDNSQSSDTSGSAADP 296
K +Q F V+A P F+R N ++ ++ +N R +Y D + ++S+ P
Sbjct: 398 KEVQ-RFNPVDAFPGDAIIFMRVLNLLRGLSASLNVRIVYLDIMRPFAESTLLGSMTRGP 456
Query: 295 VRDTCWCMYEAYSRAHIQDMVSQI 224
++ W +Y++ + ++ + +
Sbjct: 457 TANSQW-IYDSPVNSEVESKLRNL 479
>03_04_0137 - 17617385-17617642,17617850-17618007,17618964-17619000
Length = 150
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 122 WSCINTKLGFPESLPPREQSAVVLSRILPDGAWRNLTDHILD--VCSRIGLVHTPTRVPD 295
+ I L FP S PP S + +++ + NLT H +D V I L+ T D
Sbjct: 64 YKTIGPLLPFPPSYPPLCSSKISMAQTMSALVCNNLTTHAIDENVLMFIALLAHLTIAYD 123
Query: 296 RVCCTA*CIR*LR 334
T CI LR
Sbjct: 124 IHAKTVECIHALR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,833,962
Number of Sequences: 37544
Number of extensions: 496032
Number of successful extensions: 1250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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