Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20096
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternati...    30   7.3  
M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternati...    30   7.3  
M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.                 30   7.3  
BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.        30   7.3  
BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor, argini...    30   7.3  
AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor, argini...    30   7.3  
AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.           30   7.3  

>M72709-2|AAA35565.1|  248|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 248

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


>M72709-1|AAA35564.1|  292|Homo sapiens protein ( Human alternative
           splicing factor mRNA, complete cds. ).
          Length = 292

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


>M69040-1|AAA03476.1|  248|Homo sapiens SF2p33 protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


>BC033785-1|AAH33785.1|  201|Homo sapiens SFRS1 protein protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


>BC010264-1|AAH10264.1|  248|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


>AB209558-1|BAD92795.1|  233|Homo sapiens splicing factor,
           arginine/serine-rich 1 (splicing factor 2, alternate
           splicing  protein.
          Length = 233

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 146 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 180


>AB062124-1|BAB93456.1|  248|Homo sapiens OK/SW-cl.3 protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 164 PP--REQSAVVLSRILPDGAWRNLTDHIL---DVC 253
           PP  R ++ VV+S + P G+W++L DH+    DVC
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,135,439
Number of Sequences: 237096
Number of extensions: 2744839
Number of successful extensions: 6159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6156
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)