Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20096
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   5.8  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    28   7.7  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 235 PYPGC-VLENRPRTYTN-TCPGQG-----LLHCLMYQMIENCPEESLRKDDVCSPVSSLS 393
           PYPG  V E  PR       P +      ++  + Y++     EE +   +    + +L 
Sbjct: 321 PYPGMKVAEVLPRVQNGYRMPFEANVPPAIVRFITYRICAGAEEERVTMSEAVRELLTLE 380

Query: 394 GFNYMFSQSMYEDLEEHLPVE 456
           GF+     + Y +L +H+P+E
Sbjct: 381 GFDQAPGSNSYFELPDHIPME 401


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 235 PYPGC-VLENRPRTYTN-TCPGQG-----LLHCLMYQMIENCPEESLRKDDVCSPVSSLS 393
           PYPG  V E  PR       P +      ++  + Y++     EE +   +    + +L 
Sbjct: 321 PYPGMKVAEVLPRVQNGYRMPFEANVPPAIVRFITYRICAGAEEERVTMSEAVRELLTLE 380

Query: 394 GFNYMFSQSMYEDLEEHLPVE 456
           GF+     + Y +L +H+P+E
Sbjct: 381 GFDQAPGSNSYFELPDHIPME 401


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 334  SQSSDTSGSAADPVRDTCWCMY 269
            S SS  S  +A+P R+TC+ MY
Sbjct: 1089 SISSSQSSQSAEPARETCYVMY 1110


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 334  SQSSDTSGSAADPVRDTCWCMY 269
            S SS  S  +A+P R+TC+ MY
Sbjct: 1089 SISSSQSSQSAEPARETCYVMY 1110


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -2

Query: 346 LPDNSQSSDTSGSAADPVRD 287
           LP +SQ+  TSGSAA PV D
Sbjct: 823 LPTSSQTPPTSGSAAPPVDD 842


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 255 EHTSRIWSVRFRQAPSGNILLKTTADCSLGGRDS 154
           +H + IW   F Q PSG +L+KT    +  G+++
Sbjct: 34  DHIAEIWRGDFIQLPSGILLIKTVFGYTTMGKNT 67


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 598 RSNCINYPSLLPQRQ 642
           RSN I YP+LLP RQ
Sbjct: 491 RSNAIRYPALLPSRQ 505


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 598 RSNCINYPSLLPQRQ 642
           RSN I YP+LLP RQ
Sbjct: 491 RSNAIRYPALLPSRQ 505


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +3

Query: 3   SRMFFSKTWVCSGYFSYLIWHWCKLSSAHLT*ENLDCVTNGVALIRSWVFRSLCL 167
           +R+F    ++     + +IW +C   + HL  +N   +++G   +    F S+C+
Sbjct: 194 ARLFNPHMYIACALLTSMIWFYCSHIAWHLLPKNNPSMSSGTRKMLKNFFISMCI 248


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +1

Query: 310 CLMYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRNYF 489
           C+ +Q  E+  +  L      S V SL+   YMFS++ YE L+    ++++P   L +Y+
Sbjct: 382 CINHQFSEHIEKLKLEHK---SYVESLNDLKYMFSEAQYELLDS---LDVKPR-ALCDYY 434

Query: 490 KSK 498
           +++
Sbjct: 435 RAR 437


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 392 LDSITCSHKVCTKIWRSIYLLKFVLN 469
           L  ++C+H+ CT+ W++ YL   + N
Sbjct: 137 LSGLSCNHRACTQCWKA-YLTNKIAN 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,686,162
Number of Sequences: 27780
Number of extensions: 430933
Number of successful extensions: 1173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)