Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20095
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   2.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.4  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   3.4  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   4.4  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 540 HLKFTKIIISYFNPIVRMARQYNELASSNTDLDIFE 647
           H+  TK++IS     +R A+ +N L   +  LDI E
Sbjct: 335 HVAQTKLVISVLEASIRCAKTFNNLEFLHYCLDISE 370


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 62  CCVALVIAIQQVTPTAFSFFQRTIQV 139
           C     +A+QQ+ PT   +F RT+ +
Sbjct: 846 CWYLFYVAVQQIEPTNSQYFLRTLDI 871


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 571 YEIIIFVNFKCNIIMKLGYLPISNLITNTVLVKSSSCF*LFEI 443
           ++ + +   K NI+  LG+  + N   +  L KSSS F L +I
Sbjct: 80  FQNVYYYELKKNILTDLGFSDLKNSDKSLALSKSSSTFDLQKI 122


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 664 YL*KLFSNISRSVLLLANSLYCRAILTMGLKYEIIIF-VNFK 542
           Y+ +LF  +S S     NSL+   I+ + +  E+I+  +N++
Sbjct: 219 YVFRLFDRVSSSTFYFFNSLFAYFIILLRIINEVILLAINYR 260


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/85 (23%), Positives = 40/85 (47%)
 Frame = +3

Query: 423 VLLVSTFISNS*KHEEDLTSTVLVIRLDIGRYPSFIIILHLKFTKIIISYFNPIVRMARQ 602
           +L+++ F + S K+   +   V    + I  Y S    ++ K + +      P  R + +
Sbjct: 102 ILVINPFANWSKKYSRRVDEIVSAAIVKINNYNSRFSHVNSKKSNLTDRKPIPTSRKSNK 161

Query: 603 YNELASSNTDLDIFENNFYKYCKLV 677
            + LAS+ + LDI  +N  K+  L+
Sbjct: 162 SDSLASALSQLDINPSNVNKFDGLI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,277
Number of Sequences: 5004
Number of extensions: 46306
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)