Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20095
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     29   3.5  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      29   3.5  
SB_55263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 226  LLNTENICFP*NSDSNKSGFVSTKRTSTNYLNRSLEKRKGGGRH 95
            L N  +  F  ++ SN SGF ST   S N  + S  K+ GGGR+
Sbjct: 1137 LRNANSEIFFSDASSNDSGFASTATVSCNLRSVSTSKKDGGGRN 1180


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 116 TKRRWASLVELQSLTQRNTSVPQCTI 39
           T++RW   V ++S+  RN S   CT+
Sbjct: 311 TRKRWGECVRMESIFIRNQSCSNCTV 336


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 622 LLANSLYCRAILTMGLKYEIIIFVNFKCNIIMKLGYLPISNLI 494
           LL     C  +L MG     ++ + +KC+ ++ +GYL  + L+
Sbjct: 288 LLVMDYLCFTLLVMGYLCFTLLLMGYKCSTLLVMGYLCCTLLV 330


>SB_55263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 679 LTNLQYL*KLFSNISRSVLLLANSLYCRAILTMGLKYEIIIFVNFKCNI 533
           L NL YL  +  N+S  + +L N  Y  A+L       II+F   +C I
Sbjct: 252 LPNLSYLLAMLPNLSYLLAMLPNLSYLLAMLPNLSYLLIILFAILRCQI 300



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 679 LTNLQYL*KLFSNISRSVLLLANSLYCRAILTMGLKYEIIIFVNFKCNIIM--KLGYL 512
           L NL YL  +  N+S    +L N LY  AIL + L Y + +  N    + M   L YL
Sbjct: 202 LPNLSYLLAVLPNLSYLSAMLPNLLYLLAIL-LRLLYLLAVLPNLSYLLAMLPNLSYL 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,345
Number of Sequences: 59808
Number of extensions: 318266
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)