Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20095
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    31   1.0  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    31   1.0  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    28   7.2  
EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isofo...    28   7.2  
EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isofo...    28   7.2  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 115  VFPKNDSSNLWMSF*CSQIHFYLSLNFKGNKCFR 216
            +FP  D S +W+ +  +Q H+Y ++NF G++  R
Sbjct: 1441 IFPGQDPSQVWVGWVTTQYHYY-NVNFDGSQGVR 1473


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 115  VFPKNDSSNLWMSF*CSQIHFYLSLNFKGNKCFR 216
            +FP  D S +W+ +  +Q H+Y ++NF G++  R
Sbjct: 1562 IFPGQDPSQVWVGWVTTQYHYY-NVNFDGSQGVR 1594


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +1

Query: 37   CIVHCGT----EVLRCVSDCNSTSDAHRLFVFPK 126
            C   CGT    + + CVS  +STS  HRL + PK
Sbjct: 1890 CPKICGTCERNKYIECVSGTSSTSRVHRLIMIPK 1923


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 567 SYFNPIVRMARQYNELASSNTDLDIFENNFYKYCKLVRHI 686
           S+F   +R +  Y   A+ N  +D+   N  +YC+L + I
Sbjct: 76  SFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCI 115


>EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isoform
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 567 SYFNPIVRMARQYNELASSNTDLDIFENNFYKYCKLVRHI 686
           S+F   +R +  Y   A+ N  +D+   N  +YC+L + I
Sbjct: 43  SFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCI 82


>EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isoform
           protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 567 SYFNPIVRMARQYNELASSNTDLDIFENNFYKYCKLVRHI 686
           S+F   +R +  Y   A+ N  +D+   N  +YC+L + I
Sbjct: 43  SFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCI 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,156
Number of Sequences: 27780
Number of extensions: 256312
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)