Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20094
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    27   2.3  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   9.2  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    25   9.2  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 369 PMICKRSKMSLRNKVTLYKTCIRPVHDLRECGV 467
           P ICK ++++L+N +TL K     V   R+ GV
Sbjct: 63  PTICKGNEIALKNNITLEKV-FETVKLARDAGV 94


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 279 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 386
           LG++   +M +  H  ++ D+   +LGR+ P++C R
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 114 VVPKMAHRHQPSEKYCGAISEGKLHTDFLPD 206
           V+P +A  H P  ++    + G++ TDF PD
Sbjct: 417 VLPLLADPH-PRVRWAACNAVGQMSTDFAPD 446


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 176 GEAPHGFPPGLGGGISHPR 232
           G AP GF P   GG   P+
Sbjct: 126 GAAPSGFAPSFRGGFGRPQ 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,248
Number of Sequences: 5004
Number of extensions: 43542
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)