Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20094
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1724 - 39452858-39454309                                         31   0.76 
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883...    29   2.3  
04_03_0823 - 20073972-20074343,20074432-20074657,20074753-20075126     27   7.1  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           27   9.3  

>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 182 APHGFPPGLGGGISHPRLLSLDNPSLGQEGQVPGRYPGCIDDIPPAYKISP*PCRVY 352
           AP    P +G    +P   +L  P L    QVPG++P CI     AY++ P PC  Y
Sbjct: 304 APSNTGPVVGAHYFYPLHDTLPLP-LPLPQQVPGQHPPCI-----AYQMPPPPCLAY 354


>07_03_1042 +
           23487326-23487443,23487555-23487957,23488057-23488397,
           23488621-23489660
          Length = 633

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 421 TKLA*GPFMTYASVVFAHAGPHTHRHPPILQSRF 522
           +KL+ G F T  +   +H  PH H HP   Q RF
Sbjct: 472 SKLSQGRFTTGNTPTTSHPHPHPHPHPHPPQGRF 505


>04_03_0823 - 20073972-20074343,20074432-20074657,20074753-20075126
          Length = 323

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 511 VGLEGVYVCAGPRERTPHSRKS*TGLMQV 425
           VGL G YV A PR  TP +RK   GL+ V
Sbjct: 181 VGLTG-YVGANPRLLTPQARKLVAGLLGV 208


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +2

Query: 203 GLGGGISHPRLLSLDNPSLGQEGQ--VPGRYP---GCIDDIPPAYKISP 334
           G+GGG   P LL L +P+  +EG+  +  R+    G  DD+ P+Y   P
Sbjct: 25  GVGGG--GPELLDLMSPNPQEEGEDRLRRRHSSSNGSADDVLPSYDFQP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,512
Number of Sequences: 37544
Number of extensions: 334012
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)