Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20094
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    27   8.3  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    27   8.3  

>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 279 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPV 443
           LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT I P+
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPL 249


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 456 ECGVRSRGPAHT*TPSNPTI 515
           EC + S GP  T TP NP I
Sbjct: 165 ECSMESCGPGDTETPKNPII 184


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 456 ECGVRSRGPAHT*TPSNPTI 515
           EC + S GP  T TP NP I
Sbjct: 165 ECSMESCGPGDTETPKNPII 184


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 456 ECGVRSRGPAHT*TPSNPTI 515
           EC + S GP  T TP NP I
Sbjct: 165 ECSMESCGPGDTETPKNPII 184


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 456 ECGVRSRGPAHT*TPSNPTI 515
           EC + S GP  T TP NP I
Sbjct: 165 ECSMESCGPGDTETPKNPII 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,072
Number of Sequences: 27780
Number of extensions: 259251
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)