Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20094
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 244 RQPIPGPGRSSTWALPWMHR 303
           R P+P  G   TW +   HR
Sbjct: 60  RYPLPYSGSKCTWTITSYHR 79


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 415 HFTKLA*GPFMTYASVVFAHAGPHTHRHPP 504
           H T LA   +   A++   H  PH H HPP
Sbjct: 444 HSTPLAHSSYP--AAIQIGHT-PHHHPHPP 470


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 478 GPHTHRHPPILQSRF 522
           GP THR P +++  F
Sbjct: 324 GPRTHRMPQLIRKIF 338


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 455 RVWCSLTRARTHIDTLQSYNP 517
           RV+CS     THI T     P
Sbjct: 43  RVYCSRNSLMTHIYTYHKSRP 63


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 278 PGRYPGCIDDIPPAY 322
           PG YP     +PP+Y
Sbjct: 302 PGVYPSTAGFLPPSY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,554
Number of Sequences: 438
Number of extensions: 3010
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)