Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20093
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.38
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 27 2.0
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 3.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.7
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 4.7
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 6.2
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 8.3
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 504 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 403
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 116 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 232
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 170 SEYLKEKKGEVIKEA-VKRLIENGKRNTMASPTS 268
S+ EKK EV K+ VKR GKR + SP+S
Sbjct: 42 SDKSSEKKDEVKKQREVKRFKRVGKRGKIGSPSS 75
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 244 EHHGFAYQLWTKDGK 288
EHH F Y WT+ GK
Sbjct: 292 EHHDFPYVAWTRIGK 306
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 352 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 444
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 252 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 73
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 72 EASAHTARTKA 40
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 210 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 49
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 48 TKANKVSLI 22
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 402 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 286
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -3
Query: 363 FVYELDSLLGEDHSKLDGEVRFDDFLSILCP*LVGEAMVFLLPFSIRRFTASLITSPFFS 184
F+ E+D LL + K + E+ FLS + GE + + F ++R + SP
Sbjct: 16 FLAEIDELLTIPYEKNELEIGVSKFLSFINK--YGEPYL-ITEFQLQRCMEKFLNSPL-- 70
Query: 183 FRYSEHLAIAVSY 145
++ E+ +++ Y
Sbjct: 71 YQLDENAVLSIFY 83
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 210 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 94
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,035
Number of Sequences: 5004
Number of extensions: 51603
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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