Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20093
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.35 
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    31   0.61 
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    31   0.61 
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    29   1.9  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    29   1.9  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    29   1.9  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    29   1.9  
Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   2.5  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   7.5  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   7.5  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    27   10.0 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    27   10.0 
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   10.0 
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   10.0 

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 119 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 232
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 210 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 31
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 30  S 28
           S
Sbjct: 136 S 136


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 210 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 31
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R     V
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFRPTLPPV 135

Query: 30  S 28
           S
Sbjct: 136 S 136


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 165 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 13
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 165 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 13
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 165 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 13
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 165 LAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQ 13
           +A  +S +  +T++ + ++STSS++GA+ A  A A  + + +   S +L +
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57


>Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical
           protein C15H7.4 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 77  ATLAPRTDDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGK---RN 247
           AT +P  +  L ++   +V  G  E  +A   +   EKK EV+     + +EN K   RN
Sbjct: 136 ATTSPTIESDLTDKPDTNVYTGSREGYVAPSEKGSNEKKKEVVPNGGDKSVENKKGSDRN 195

Query: 248 TMASPT 265
              +P+
Sbjct: 196 VKKTPS 201


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 205 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 41
           DN + +  Q FR+ G S +     +  +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 122 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 208
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 122 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 208
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +1

Query: 325  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 480
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 481  NNRVYFKI 504
               V FK+
Sbjct: 971  AGTVLFKV 978


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +1

Query: 325  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 480
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 481  NNRVYFKI 504
               V FK+
Sbjct: 971  AGTVLFKV 978


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 256 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 435
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 436 KTSKKVS 456
           KT    S
Sbjct: 304 KTQHSTS 310


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 CSEYLKEKKGEVIKEAVKRLIENGKRNTMASPTSY 271
           C+E +K+KK +V  +A+KRL++       +SP  +
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPF 470


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 15  APR*D*LCLPSSSP-CV-RWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 161
           APR D +C+PS SP CV ++ L P   + + T   ++C  V++L  +RP+S
Sbjct: 259 APRCDSMCMPSCSPSCVQQYSLCPQQCRPMCT---NAC--VTNLQVSRPVS 304


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 CSEYLKEKKGEVIKEAVKRLIENGKRNTMASPTSY 271
           C+E +K+KK +V  +A+KRL++       +SP  +
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPF 470


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -2

Query: 250 GVPLAVFDQTLHGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTHIQLLRQ 107
           G+P    +Q L  F  N  +  L+I     R  GD+ +VFTN++ +   L++
Sbjct: 11  GLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -2

Query: 250 GVPLAVFDQTLHGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTHIQLLRQ 107
           G+P    +Q L  F  N  +  L+I     R  GD+ +VFTN++ +   L++
Sbjct: 11  GLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,412
Number of Sequences: 27780
Number of extensions: 293532
Number of successful extensions: 1042
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)