Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20092
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.37 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 437 WKLGPRGEPEPTSTCRSARTR 375
           WK  P+G P P+ST  S  T+
Sbjct: 67  WKKSPQGAPSPSSTPSSLPTQ 87



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 439 CAEGWQVGPGSVHWQRARWQDPRLLGLGRV 528
           C E  ++GP  VH ++       + G G+V
Sbjct: 296 CQEAERLGPAGVHLRKKNIHSCHIPGCGKV 325


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 484 RARWQDPRLLGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFH 621
           R  W DPRL    R G E  +    F  NI   D F   ++ + FH
Sbjct: 93  RQFWTDPRLAYGKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFH 138


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 425 PRGEPEPTSTCRSARTRSA 369
           P  EP+PT T  S  T+++
Sbjct: 397 PTPEPQPTQTTESEPTQAS 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,891
Number of Sequences: 336
Number of extensions: 3176
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)