Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20092
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    51   1e-07
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    40   4e-04
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    31   0.17 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.52 
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    28   1.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   3.7  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   4.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   8.5  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +2

Query: 242 QRGVDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARH 421
           +R ++A   L V+G    G + +D+D A ++G+ V N+P AN+ S  EL    ++ LAR 
Sbjct: 111 RRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQ 170

Query: 422 VVPASNALKAGRWDR 466
           V   S  L  G W++
Sbjct: 171 VGDRSLELHRGEWNK 185


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = +2

Query: 266 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASNAL 445
           KL V G   AG +N+DVD A + GV V N P         +   L +   R    A  +L
Sbjct: 85  KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142

Query: 446 KAGRWDRAL 472
           + G+W + L
Sbjct: 143 RLGKWRQNL 151


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 492 ASSLPVYRARSHLPAFSALEAGTTWRARTNINVQVSS-HALSALAPGALITPTPFLPAES 316
           +SSLP   + S  P+ S++   T+  +    +V  SS H +    P  L  P+ F+ A+ 
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175

Query: 315 TSMLSTPAP 289
            S L TP P
Sbjct: 176 LSRLPTPLP 184


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
 Frame = -1

Query: 651 PNVLQLHLGAMELGALISRHERVESDDVHAEGVH----PSGHLAADPAKAKEA-RVLPAS 487
           P  +Q+  G++ LG    +  +  SD++   G      P   ++  P   KEA +V  ++
Sbjct: 433 PEKVQVRFGSLTLGGEDKKSTKSSSDNIAQSGPRSSYFPKKTVSPKPEAKKEASKVAEST 492

Query: 486 SLP------VYRAR---SHLPAF--SALEAGTTWRARTNINVQVSSHALSALAPGALITP 340
            +P       Y +R   S +P     +    T +R   ++N+  S +A S  A    ++ 
Sbjct: 493 KIPKKQHTSAYESRAPQSKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSA 552

Query: 339 TPFLPAESTSMLSTP 295
              +PA STS  S P
Sbjct: 553 QTTIPAASTSATSGP 567


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 609 ALISRHERVESDDVHAEGVHPSGHLAADPAKAKEARV 499
           A+   HE VE   V+ + VH  G L  DP K +   V
Sbjct: 112 AVFDNHEEVEVFPVYRDPVHDFGFLRFDPKKIRYMNV 148


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 477 VYRARSHLPAFSALEAGTTWRARTNINVQVSSHALSALAPGA 352
           + R R HL  + A E  T WR    +  +  +  LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 534 AADPAKAKEARVLPASSLPVYRARSHLPAFSALEAGTTWRARTNINVQVSSHALSALAPG 355
           AA+P+ +    + P  S P     S    +S   AG     +T      ++ A +A  P 
Sbjct: 310 AAEPSSSTATDIPPPYSTPSVAGASD---YSTPSAGY----QTVQTTTTTTEAAAAQYPQ 362

Query: 354 ALITPTPFLPAESTSMLSTPAPA 286
           A   P P +P  + + ++TP  A
Sbjct: 363 AAFPPPPVMPQPAAAAVTTPVAA 385


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 269 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASNALK 448
           +K +   GAG + +DV +   +G+ V + P A   +  ++   LML   R        L 
Sbjct: 81  VKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELH 140

Query: 449 AGRWD 463
              W+
Sbjct: 141 KNNWN 145


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 164 QDLQGRTSYGDTQPRRSGCAFSNSSDQRG-VDAGVK--LKVVGRAGAGVDNIDVDSAGKK 334
           Q+L         Q  +S  A    S Q G V  G K  +K + +  A +D+I  DS    
Sbjct: 654 QELDAIKEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPM 713

Query: 335 GVGVINAP 358
           G G +N+P
Sbjct: 714 GTGAVNSP 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,303
Number of Sequences: 5004
Number of extensions: 50541
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)