Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20092
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.98 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 408 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLS 301
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 484 RARWQDPRLLGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFH 621
           R  W DPRL    R G E  +    F  NI   D F   ++ + FH
Sbjct: 64  RQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFH 109


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 484 RARWQDPRLLGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFH 621
           R  W DPRL    R G E  +    F  NI   D F   ++ + FH
Sbjct: 64  RQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFH 109


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 484 RARWQDPRLLGLGRVGREVATRMYAFGMNIIGFDPFVSADQCAQFH 621
           R  W DPRL    R G E  +    F  NI   D F   ++ + FH
Sbjct: 3   RQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFH 48


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 299 HQLQHDRPPSASRLRQHLFGHLS 231
           H   HD PP  S     LF H S
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFS 155


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 391 LHVDVGSGSP--RGPSFQCAEGWQVGPGSVHWQRAR 492
           LH  +G+  P  R PSF+C E  + G   +H+   R
Sbjct: 104 LHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDR 139


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 391 LHVDVGSGSP--RGPSFQCAEGWQVGPGSVHWQRAR 492
           LH  +G+  P  R PSF+C E  + G   +H+   R
Sbjct: 104 LHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDR 139


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 299 HQLQHDRPPSASRLRQHLFGHLS 231
           H   HD PP  S     LF H S
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFS 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,642
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)