Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20091
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.2
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 27 2.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.5
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 27 3.5
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 4.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 4.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 26 6.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 8.1
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 25 8.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 8.1
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 624 GPFLNNSARMWSSSPDTVYTCFPYCLSCL*LTSYPDSHFLCI 499
GP N + W S +Y P SC+ T Y +S+ + +
Sbjct: 2009 GPINNYMIKSWGSRLSYIYAFKPLICSCVPATEYLESNIMMV 2050
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 205 SCWAFGAVEAMTDRVCT-ILTELNIFIFLPRICLVAALFVDWDAAEEC 345
SCW G + + + T L +IFI R L L+ +WD A C
Sbjct: 305 SCWNIGTLSSTISCLDTNFLAIKDIFIACIRRSLAYPLYRNWDLALTC 352
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 531 TSYPDSHFLCILESSCH 481
T PD +LC+L SCH
Sbjct: 637 TPIPDCPYLCVLPKSCH 653
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 539 KQDKQYGKHVYTVSGDEDHIRAELFK---NGPVEGAFTV 646
+QDKQ G V+T++ D H++ +F+ P EG + V
Sbjct: 17 QQDKQAGIQVWTINDDISHLKG-MFRGPEGTPYEGGYFV 54
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 67 DEHFATLPIKTHKIDLIASL--PENFDPRDKWPDCPTLNEVRDQGSCGSCWAFGA 225
+E P+ ++ D I +L P++ D WP L V GS C FG+
Sbjct: 37 EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 492 TPKCTKNANLDTTLITNKTNNTENMYILCPETKTTSAPNCS 614
TP +AN T+ +++ NT + P +TTS+P+ S
Sbjct: 34 TPSSLYDANNSTSSTSSQKPNTSFTSLFGPRKQTTSSPSFS 74
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 468 MPCSGDTKTPKCTKNANLDTTLITNKTNNTENMYILCPETKTTSAPNCS 614
+ C T+ P K+A D + KT+N E++ C E T S+ CS
Sbjct: 471 LSCVWTTEVP--LKDA-FDLKSVLRKTDNVESVLNACVEKYTLSSITCS 516
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 396 SYNSSQGCRPYEIPPCEHHVPGNRMP 473
S N + C P+ PP +HH P R P
Sbjct: 153 SSNHVRSCPPF--PPTQHHHPHTRPP 176
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +1
Query: 151 KWPDCPTLNEVRDQGSCGSCWAFGA---VEAMTDRVCTILTELNIFI 282
KWPD L V D S CW A+ V +T+L+ +
Sbjct: 51 KWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNVMNDVTQLHTIV 97
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 246 SMYYSNGTKHFHFSAEDLLSCC 311
S ++SN FH + LLSCC
Sbjct: 1218 SKHFSNLENSFHSLVQKLLSCC 1239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,598
Number of Sequences: 5004
Number of extensions: 70196
Number of successful extensions: 235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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