Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20091
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 672 LLYDSKSEYTVKAPSTGPFLNNSARMWSSSPDTV-YTCFPYCLSCL*LT 529
           +L   +S+ +   P  GP     ARM + + D V    FP+  + L +T
Sbjct: 371 MLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFLFAVLNVT 419


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 400 TIPVKVADLTRSLRVNITYP 459
           T+P++  DLT+S   +ITYP
Sbjct: 95  TLPIE--DLTKSDNEDITYP 112


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 400 TIPVKVADLTRSLRVNITYP 459
           T+P++  DLT+S   +ITYP
Sbjct: 133 TLPIE--DLTKSDNEDITYP 150


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 588 KTTSAPNCSRMVRSKVLSQYIQIC 659
           + TS PN SR+ +S++     Q C
Sbjct: 93  RITSVPNTSRLDKSEISLATKQAC 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,200
Number of Sequences: 438
Number of extensions: 4801
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)