Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20090
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 134 8e-33
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 134 8e-33
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 81 8e-17
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 69 3e-13
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 43 3e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 34 0.012
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 29 0.45
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.45
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 28 1.0
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 2.4
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 4.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 4.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.6
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 25 5.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 5.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 9.7
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.7
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 134 bits (324), Expect = 8e-33
Identities = 63/85 (74%), Positives = 73/85 (85%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
RI GPN+ PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT+TT
Sbjct: 412 RIQGPNYVPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTT 471
Query: 183 FKNAHNMKVMKFSVSPVVRVAVEPK 257
+ AHNMKVMKFSVSPVV+VAVE K
Sbjct: 472 SEVAHNMKVMKFSVSPVVQVAVEVK 496
Score = 132 bits (320), Expect = 2e-32
Identities = 64/85 (75%), Positives = 70/85 (82%)
Frame = +2
Query: 254 QNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 433
+N DLPKLVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLK 555
Query: 434 KSDPVVSYRETVAEESDQLXLSKSP 508
S PVVSYRE+V+E S LSKSP
Sbjct: 556 ISPPVVSYRESVSEPSSMTALSKSP 580
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 499 KVAHKHNRLFMKAQPM 546
K +KHNR+FM A+PM
Sbjct: 578 KSPNKHNRIFMTAEPM 593
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 134 bits (324), Expect = 8e-33
Identities = 63/85 (74%), Positives = 73/85 (85%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
RI GPN+ PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT+TT
Sbjct: 412 RIQGPNYVPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTT 471
Query: 183 FKNAHNMKVMKFSVSPVVRVAVEPK 257
+ AHNMKVMKFSVSPVV+VAVE K
Sbjct: 472 SEVAHNMKVMKFSVSPVVQVAVEVK 496
Score = 132 bits (320), Expect = 2e-32
Identities = 64/85 (75%), Positives = 70/85 (82%)
Frame = +2
Query: 254 QNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 433
+N DLPKLVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLK 555
Query: 434 KSDPVVSYRETVAEESDQLXLSKSP 508
S PVVSYRE+V+E S LSKSP
Sbjct: 556 ISPPVVSYRESVSEPSSMTALSKSP 580
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 499 KVAHKHNRLFMKAQPM 546
K +KHNR+FM A+PM
Sbjct: 578 KSPNKHNRIFMTAEPM 593
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 81.4 bits (192), Expect = 8e-17
Identities = 41/81 (50%), Positives = 52/81 (64%)
Frame = +2
Query: 260 PADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKS 439
P ++ KLV GL L ++DP VQ EE+GEH++ AGE+HLE CLKDL E A I I+ S
Sbjct: 573 PFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERFAKIEIQAS 632
Query: 440 DPVVSYRETVAEESDQLXLSK 502
P+V YRET D L +K
Sbjct: 633 QPLVPYRETTIATPDLLAKNK 653
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 IMGPNFTPGKKEDLYEK-TIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
+ GP + P E K T++ LMMG+ + +E VP+GN+ + G+ +++T T+ +
Sbjct: 487 VYGPKYDPVNPEKHITKVTVESLYLMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCS 546
Query: 183 FKNAHNMKVMKFSVSPVVRVAVEP 254
N N+ + + P+VRVA+EP
Sbjct: 547 SPNGPNLVGVTQQMEPIVRVALEP 570
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 69.3 bits (162), Expect = 3e-13
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +2
Query: 257 NPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKK 436
NP++LPKL++GL++ KS P+ EESGEH + G GE++++ L DL ++ I I+
Sbjct: 609 NPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRV 668
Query: 437 SDPVVSYRETVAEESDQLXLSKSP 508
SDPV + ET + S S +P
Sbjct: 669 SDPVARFCETAVDTSSIKCFSDTP 692
Score = 32.7 bits (71), Expect = 0.037
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
+++G N++ +ED+ I + RY ++ +G + L GVD + KT TI +
Sbjct: 521 KVLGENYSLEDEEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTATIVS 580
Query: 183 FK---NAHNMKVMKFSVSPVVRVAVEP 254
+ + + + V +VAVEP
Sbjct: 581 DNLKDDPYIFRPIAHMSESVFKVAVEP 607
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 266 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSD 442
D + L R + DP + ++ ES E I++G GELHLE+ ++ + ++ + +
Sbjct: 486 DTTSFSKALNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERMRREYK-VDCETGK 544
Query: 443 PVVSYRETVAEE 478
P V++RET++++
Sbjct: 545 PRVAFRETLSKK 556
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.3 bits (75), Expect = 0.012
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 DLPKLVEGLKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSD 442
D P L+E L + + DP + + E+G+ ++ G G +HL++ + L +
Sbjct: 456 DEPALLEALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGK 514
Query: 443 PVVSYRETVAEES 481
V YRET+ + S
Sbjct: 515 VQVGYRETLIDVS 527
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 29.1 bits (62), Expect = 0.45
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 260 PADLPKLVEGLKRLAKSD--PMVQCINEESGEHIVA----GAGELHLEI 388
P D+ KL EGL++L + D +VQ +NE + GE H+++
Sbjct: 172 PVDMDKLAEGLQKLQEDDLLQVVQMVNENKTPDMYVRNDIEGGEFHIDL 220
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.45
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 477 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 310
S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 138 VGVDQFLVKTGTITTFKNAHNMKV--MKFSVSP 230
+GVD F K G + +K+ N+K+ +K+ V+P
Sbjct: 404 MGVDDFEEKPGVLANWKSVKNLKLLSLKYDVTP 436
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 147 DQFLVKTGTITTFKNAHNMKVMKFSVSPVV 236
D FLVK G + ++ +N+ FSVS +V
Sbjct: 82 DTFLVKYGDLINIQDPYNLNKTLFSVSDLV 111
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 12 GPNFTP-GKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVG 143
G +F P GK ++ + Q + + RY+ DVP+G+I G+ G
Sbjct: 115 GSDFDPKGKSDNEIRRFSQAFMRQLFRYIGPQTDVPAGDI-GVTG 158
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 383 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLXLSKS 505
E+C +LE+D I +S +S + A++ DQL S +
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSST 104
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 375 SSPAPATMCSPDSSL--IHCTMGSDLARRLRPS 283
S+ +P+T+CSPD+++ ++ G L ++ P+
Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 214 NSVYHQSCVSLLSPKP 261
NSV +SCVS+LS KP
Sbjct: 172 NSVSKKSCVSILSRKP 187
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 194 PQHEGDEIQCITSRACRC*AQNPADLPKLVEGLKRLAKSDPMVQCINEESGE 349
P+ EGD I + + + DL K +R K+ PM++ +++ SGE
Sbjct: 248 PEPEGDRITNVMKLLIPEDSNDSLDLAK-----RRSCKTPPMIEFVSDSSGE 294
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 90 YVEAIEDVPSGNIC--GLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVE 251
Y+ A ++ SG G V + L T ++ A + + K + SP+VR+ E
Sbjct: 414 YIAAFSEILSGRNYDFGEVSIQLMLSCTTCVSNMMEALPLCMAKIAYSPIVRILCE 469
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 116 GHILNSFNITSHHKDCTLDSLLIQ 45
G+++N F + SHH L L+ Q
Sbjct: 573 GNVINGFIVRSHHDQLILKELMRQ 596
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 317 MVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 433
M + IN +S + +E CL L+E H +P++
Sbjct: 1 MKEMINLDSSSEPSIVTKQFSVEECLSKLKEQHCYVPMR 39
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 293 KRLAKSDPMVQCINEESGEHIVAGAGEL 376
KR A + +V C+NE E +A A EL
Sbjct: 83 KRAAIAQQLVNCVNELFYEEALARAAEL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,055
Number of Sequences: 5004
Number of extensions: 46732
Number of successful extensions: 154
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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