Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20090
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 166 1e-41
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 166 1e-41
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 76 1e-14
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 76 1e-14
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 53 6e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 35 0.044
Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 28 3.9
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 28 5.1
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 5.1
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 28 5.1
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 5.1
Z81462-2|CAB03841.1| 263|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69788-7|CAM33502.1| 132|Caenorhabditis elegans Hypothetical pr... 27 6.7
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 27 6.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 27 6.7
AC006815-2|AAL32261.1| 301|Caenorhabditis elegans Hypothetical ... 27 6.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 166 bits (403), Expect = 1e-41
Identities = 77/86 (89%), Positives = 82/86 (95%)
Frame = +2
Query: 251 AQNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPI 430
A+NPADLPKLVEGLKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+
Sbjct: 505 AKNPADLPKLVEGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEICLKDLEEDHACIPL 564
Query: 431 KKSDPVVSYRETVAEESDQLXLSKSP 508
KKSDPVVSYRETV ES+Q+ LSKSP
Sbjct: 565 KKSDPVVSYRETVQSESNQICLSKSP 590
Score = 155 bits (375), Expect = 3e-38
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
RI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGVDQ+LVK GTITT
Sbjct: 422 RIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGVDQYLVKGGTITT 481
Query: 183 FKNAHNMKVMKFSVSPVVRVAVEPK 257
+K+AHNM+VMKFSVSPVVRVAVE K
Sbjct: 482 YKDAHNMRVMKFSVSPVVRVAVEAK 506
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 166 bits (403), Expect = 1e-41
Identities = 77/86 (89%), Positives = 82/86 (95%)
Frame = +2
Query: 251 AQNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPI 430
A+NPADLPKLVEGLKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+
Sbjct: 505 AKNPADLPKLVEGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEICLKDLEEDHACIPL 564
Query: 431 KKSDPVVSYRETVAEESDQLXLSKSP 508
KKSDPVVSYRETV ES+Q+ LSKSP
Sbjct: 565 KKSDPVVSYRETVQSESNQICLSKSP 590
Score = 155 bits (375), Expect = 3e-38
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
RI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGVDQ+LVK GTITT
Sbjct: 422 RIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGVDQYLVKGGTITT 481
Query: 183 FKNAHNMKVMKFSVSPVVRVAVEPK 257
+K+AHNM+VMKFSVSPVVRVAVE K
Sbjct: 482 YKDAHNMRVMKFSVSPVVRVAVEAK 506
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/84 (39%), Positives = 58/84 (69%)
Frame = +2
Query: 257 NPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKK 436
NP++LPK+++GL+++ KS P++ EESGEH++ G GE +++ + D+ + + I IK
Sbjct: 600 NPSELPKMLDGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKV 659
Query: 437 SDPVVSYRETVAEESDQLXLSKSP 508
+DPVV++ ETV E S +++P
Sbjct: 660 ADPVVTFNETVIETSTLKCFAETP 683
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
R++G N++ +ED T+ R + + Y + VP+G + G+DQ +VKT TI
Sbjct: 512 RVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAGCWVLIEGIDQPIVKTATIAE 571
Query: 183 F---KNAHNMKVMKFSVSPVVRVAVEP 254
++ + + +KF+ V++AVEP
Sbjct: 572 LGYEEDVYIFRPLKFNTRSCVKLAVEP 598
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/84 (39%), Positives = 58/84 (69%)
Frame = +2
Query: 257 NPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKK 436
NP++LPK+++GL+++ KS P++ EESGEH++ G GE +++ + D+ + + I IK
Sbjct: 475 NPSELPKMLDGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKV 534
Query: 437 SDPVVSYRETVAEESDQLXLSKSP 508
+DPVV++ ETV E S +++P
Sbjct: 535 ADPVVTFNETVIETSTLKCFAETP 558
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 182
R++G N++ +ED T+ R + + Y + VP+G + G+DQ +VKT TI
Sbjct: 387 RVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAGCWVLIEGIDQPIVKTATIAE 446
Query: 183 F---KNAHNMKVMKFSVSPVVRVAVEP 254
++ + + +KF+ V++AVEP
Sbjct: 447 LGYEEDVYIFRPLKFNTRSCVKLAVEP 473
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +2
Query: 266 DLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDP 445
D+ L E LK LA D ++ + E+GE + AGE+HL+ C+KDL D + + S+P
Sbjct: 489 DMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEP 547
Query: 446 VVSYRETVAEES 481
+V + ETV E+S
Sbjct: 548 IVPFMETVIEDS 559
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +2
Query: 266 DLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDP 445
D+ L E LK LA D ++ + E+GE + AGE+HL+ C+KDL D + + S+P
Sbjct: 489 DMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEP 547
Query: 446 VVSYRETVAEES 481
+V + ETV E+S
Sbjct: 548 IVPFMETVIEDS 559
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 53.2 bits (122), Expect(2) = 6e-08
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 NPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 433
N D ++ L R K DP + N+E+ E IV+G GELHLEI + ++ ++ C P++
Sbjct: 456 NRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGELHLEIYAQRMKSEYNC-PVE 514
Query: 434 KSDPVVSYRE 463
P V+YRE
Sbjct: 515 LGKPTVAYRE 524
Score = 20.6 bits (41), Expect(2) = 6e-08
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 440 DPVVSYRETVAEESDQ 487
DP+ S R TV E SD+
Sbjct: 554 DPLPSDRNTVVEFSDE 569
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.7 bits (76), Expect = 0.044
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 284 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 460
+ L+ L + DP ++ + ++G+ IV GELHLE +KD + + + + V+YR
Sbjct: 412 KALEELTREDPSMKIRFDRDTGQTIVETQGELHLE-AIKDRLKRNYKLDVFIGKLQVAYR 470
Query: 461 ETVAEE 478
E + EE
Sbjct: 471 EMLTEE 476
>Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical
protein H40L08.1 protein.
Length = 444
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 324 CTMGSDLARRLRPSTSLGRS 265
C MGS+ A+RLRP + GRS
Sbjct: 202 CVMGSEDAQRLRPDRAFGRS 221
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 84 GRYVEAIEDVPSGN-ICGLVGV 146
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 84 GRYVEAIEDVPSGN-ICGLVGV 146
GR+VEAIED+P G +C G+
Sbjct: 29 GRFVEAIEDIPIGTVVCVETGI 50
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 373 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 263
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 378 WSSPAPATMCSPDSSLIHCT 319
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 373 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 263
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 378 WSSPAPATMCSPDSSLIHCT 319
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>Z81462-2|CAB03841.1| 263|Caenorhabditis elegans Hypothetical
protein C04H5.2 protein.
Length = 263
Score = 27.5 bits (58), Expect = 6.7
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +2
Query: 125 HLWSRWSRSVLSQDWYHHHFQECPQ 199
+LW+ W++ S +W+ + ++C Q
Sbjct: 188 YLWTTWAQGEPSANWWEYDIEDCLQ 212
>Z69788-7|CAM33502.1| 132|Caenorhabditis elegans Hypothetical
protein F09A5.9 protein.
Length = 132
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 299 LAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 478
L SD ++ E GEH GE+ + L+ H C +++D ++ E A+
Sbjct: 52 LFDSDDVLDETTVEYGEHFTLDGGEIEIFSTEPYLQIVHKCFGTERTD-IIDLSEFEADS 110
Query: 479 SDQL 490
+D L
Sbjct: 111 NDIL 114
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 480 DSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLI 328
+ +T + Y+ G+DFL G+Q + +S A A + P+SS +
Sbjct: 379 EKKSTAAEYNPFGADFLSGIQNGKEAPPSASAELLASEAIARLPKPESSSV 429
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 480 DSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLI 328
+ +T + Y+ G+DFL G+Q + +S A A + P+SS +
Sbjct: 379 EKKSTAAEYNPFGADFLSGIQNGKEAPPSASAELLASEAIARLPKPESSSV 429
>AC006815-2|AAL32261.1| 301|Caenorhabditis elegans Hypothetical
protein Y6D11A.2 protein.
Length = 301
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 373 FSSTSDNVFS*FFINTLHHGVRFSQTFKT-FY*LGQISRVLGSTATRTTGDTLNFITFML 197
F D + F+ G + SQT Y LG+ L GD + +ITF+L
Sbjct: 170 FKDADDVIIGKVFLQEFREGRKASQTAPAVLYSLGEPPLELKDLPEARVGDNVGYITFVL 229
Query: 196 W 194
+
Sbjct: 230 F 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,024,951
Number of Sequences: 27780
Number of extensions: 274338
Number of successful extensions: 717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -