Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20088X
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 107 5e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 7e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 52 4e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 45 4e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 36 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.005
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 33 0.021
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 3.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.1
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 4.1
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 24 7.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 24 9.6
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 107 bits (258), Expect = 5e-25
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+E++AA+V+DNGSGMCKAGFAGD APRAVFPSIVGRPRH G+MVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 98.7 bits (235), Expect = 3e-22
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 99
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 60.9 bits (141), Expect = 7e-11
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +3
Query: 99 DVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
D + +DNGSG KAGFAGD P+ +FP+ VGR +H+ VM QKD +VG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59
Score = 50.8 bits (116), Expect = 7e-08
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPE 385
+EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PE
Sbjct: 60 SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPE 104
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 51.6 bits (118), Expect = 4e-08
Identities = 17/56 (30%), Positives = 40/56 (71%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
+ G + ++ +EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 105 AAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRP 203
A +V+DNG+G K G+A D PR FPSIVGRP
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 45.2 bits (102), Expect = 4e-06
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 254 NEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
N+A K +L YPI HG + NWD ME+ W + + LR PE
Sbjct: 78 NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260
+++DNG+G K G+AG+ AP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 35.9 bits (79), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVG 197
++V+A+V+D GS + GF+G+ P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
+ +K I +G V NWD +W + +L+ P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNP 96
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.7 bits (76), Expect = 0.005
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 81 FKMCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPR 206
F+ D+ +V+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 30.7 bits (66), Expect = 0.083
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 358
RD + L N+ + G ++ + P E +++NWD ME++ +TF
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 32.7 bits (71), Expect = 0.021
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVG 197
E++ ++V+D GS + G+AG+ +P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 232 PIPTITP*WRGLPTIEGNTARGATSPAKPAL 140
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTF 358
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 263 VPHSYIRVLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHTG 129
V +Y +LL D + + G +DR + + + + C L H+G
Sbjct: 223 VKGTYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAG 158
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 333 MSSQLVTIPCSMGYLRVRIPLLLCASFLHKSPSVPYRPSR 214
+SS +IP +L+ I + L + F + PS+ Y+ SR
Sbjct: 157 VSSSFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSR 196
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 263 VPHSYIRVLLSHTDHHALMA 204
VPHSY V L ++DH + A
Sbjct: 825 VPHSYQSVPLYYSDHRPIYA 844
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 156 GDVAPRAVFPSIVGRPRHQGVMVGM 230
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 293 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,526
Number of Sequences: 5004
Number of extensions: 33894
Number of successful extensions: 89
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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