Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20088X
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 118 1e-27
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 118 1e-27
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 118 1e-27
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 117 3e-27
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 117 3e-27
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 117 3e-27
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 117 3e-27
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 117 3e-27
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 117 3e-27
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 117 3e-27
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 117 3e-27
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 117 3e-27
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 110 3e-25
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 100 3e-22
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 100 3e-22
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 60 4e-10
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 6e-07
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 47 5e-06
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 34 0.030
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 34 0.030
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 30 0.49
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 29 0.86
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 26 8.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 118 bits (285), Expect = 1e-27
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD+DVAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 118 bits (285), Expect = 1e-27
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD+DVAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 66.5 bits (155), Expect = 6e-12
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKI 343
+EAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 118 bits (285), Expect = 1e-27
Identities = 54/62 (87%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD+DVAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 60.9 bits (141), Expect = 3e-10
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDM 334
+EAQSKRGILTLKYPIEHGIVTNWDDM
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDM 83
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD+DVAA+++DNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 66.5 bits (155), Expect = 6e-12
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKI 343
+EAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 117 bits (281), Expect = 3e-27
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
Score = 66.5 bits (155), Expect = 6e-12
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKI 343
+EAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 110 bits (265), Expect = 3e-25
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+E++AA+VVDNGSGMCKAGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 100 bits (239), Expect = 4e-22
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR+APE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPE 99
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 13 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 56
Score = 30.3 bits (65), Expect = 0.49
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 219 MVGMGQKDSYVGMRHRAK 272
MVGMGQKDSYVG ++K
Sbjct: 1 MVGMGQKDSYVGDEAQSK 18
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 100 bits (240), Expect = 3e-22
Identities = 43/44 (97%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
Sbjct: 43 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 86
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 141 KAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+AGFAGD APRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 48
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 60.5 bits (140), Expect = 4e-10
Identities = 23/44 (52%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Frame = +2
Query: 257 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 385
+A+S RG+ +++YP+EHGIV NW DMEKIW + F ++L++ PE
Sbjct: 60 KAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPE 103
Score = 56.0 bits (129), Expect = 9e-09
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +3
Query: 93 DEDVAA---VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
D DV A VV+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIG 58
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 50.0 bits (114), Expect = 6e-07
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 358
R G + L+ E R +L + YP+++GIV NWDDM +W HTF
Sbjct: 46 RVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTF 93
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRP 203
+VVDNG+G K G+AG P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 46.8 bits (106), Expect = 5e-06
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 284 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
T+KYPI HGIV +WD ME+ W + LR PE
Sbjct: 80 TVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPE 113
Score = 36.3 bits (80), Expect = 0.008
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 87 MCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIV 194
M + A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.030
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTF 358
PIE G V NWD ++IW TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.030
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTF 358
PIE G V NWD ++IW TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 191 RGKAPPSGRDGRYGTEGLLCRNEAQSKRG 277
RGKA +GRDGR G EG Q +RG
Sbjct: 216 RGKAGHTGRDGRPGLEGTPGTRGVQGERG 244
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIV 194
++V+ +V D GS + GFAG+ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -3
Query: 348 CQIFSMSSQLVTIPC-SMGYLRVRIP---LLLCASFLHKSPSVPYRPSRPDG 205
CQ+FS QLVT+ SMG +++++ L L AS P++ P DG
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNPPEIDG 302
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +3
Query: 81 FKMCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKD 242
+ M D+ + VV+ G+G G + + R +VG H ++ G + D
Sbjct: 547 YDMGDKHIDLVVLTAGTGGTVTGISRKIHERIPTAKVVGVDPHGSILAGPAETD 600
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +3
Query: 81 FKMCDEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKD 242
+ M D+ + VV+ G+G G + + R +VG H ++ G + D
Sbjct: 547 YDMGDKHIDLVVLTAGTGGTVTGISRKIHERIPTAKVVGVDPHGSILAGPAETD 600
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,568,659
Number of Sequences: 27780
Number of extensions: 203672
Number of successful extensions: 710
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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