Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20088X
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.30 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.92 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   1.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   8.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 287 GSGYLFCSVPHSYIRVLLSHTDHHALMAGPSHDRGEHGARSNISC 153
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 257 HSYIRVLLSHTDHHALMAGPSHDRGEHGARSNISCETGLAHT 132
           HS+I     H  HH+  A P H      A S+      + HT
Sbjct: 423 HSHIHATPHH--HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 197 KAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDD 331
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 197 KAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDD 331
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 190 IEGNTARGATSPAKPALHIPEPL 122
           +E     G+T+PA P L  P  L
Sbjct: 15  VENLKGGGSTTPASPTLSTPPTL 37


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 87  MCDEDVAAVVVDNGSGMCKAGFAGD 161
           + D+D    + D   GMCK G +GD
Sbjct: 117 LLDQDGHIKIAD--FGMCKEGISGD 139


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 NGSGMCKAGFAGDVAPRAVFPSIVGRPRHQ 212
           +G   CK G+  DV  +      +G+ +H+
Sbjct: 244 SGGCHCKPGYQADVEKQECTECPIGKFKHE 273


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +2

Query: 188 DRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGI 313
           D  K PPS R  R        RN     RG    K  + H I
Sbjct: 403 DPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAI 444


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 341 SSPCHPS**RFRVRWGI*GSGYLFCSVPHSYIRVLLSH 228
           +SP H S  +  +  G+    +L C VP   + ++ S+
Sbjct: 260 TSPYHVSDHKAAITVGVIMGVFLICWVPFFCVNIVTSY 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,659
Number of Sequences: 438
Number of extensions: 2840
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)