Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20088X
(386 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 99 9e-22
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 99 9e-22
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 99 1e-21
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 99 1e-21
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 99 1e-21
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 99 1e-21
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 98 2e-21
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 98 2e-21
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 98 2e-21
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 91 2e-19
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 84 4e-17
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 80 6e-16
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 58 3e-09
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 53 8e-08
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 52 1e-07
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 45 2e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 44 5e-05
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 33 0.050
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 29 1.4
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 2.5
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 2.5
At1g71850.1 68414.m08303 expressed protein ; expression supporte... 27 4.4
At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase famil... 27 5.8
At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase famil... 27 5.8
At5g60190.1 68418.m07545 Ulp1 protease family protein low simila... 27 5.8
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 27 5.8
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 27 5.8
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 26 7.6
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 99.1 bits (236), Expect = 9e-22
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 99.1 bits (236), Expect = 9e-22
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 98.7 bits (235), Expect = 1e-21
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 98.7 bits (235), Expect = 1e-21
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 98.7 bits (235), Expect = 1e-21
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 98.7 bits (235), Expect = 1e-21
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPE
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 101
Score = 96.7 bits (230), Expect = 5e-21
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
ED+ +V DNG+GM KAGFAGD APRAVFPSIVGRPRH GVMVGMGQKD+YVG ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 98.3 bits (234), Expect = 2e-21
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APE
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPE 101
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+D+ +V DNG+GM KAGFAGD APRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 98.3 bits (234), Expect = 2e-21
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APE
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPE 101
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+D+ +V DNG+GM KAGFAGD APRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 98.3 bits (234), Expect = 2e-21
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APE
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPE 101
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+D+ +V DNG+GM KAGFAGD APRAVFPS+VGRPRH GVMVGM QKD+YVG ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 91.5 bits (217), Expect = 2e-19
Identities = 36/44 (81%), Positives = 43/44 (97%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
+EAQ++RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PE
Sbjct: 59 DEAQARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPE 102
Score = 90.6 bits (215), Expect = 3e-19
Identities = 42/60 (70%), Positives = 51/60 (85%)
Frame = +3
Query: 93 DEDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
DE VA +V DNG+GM KAGFAGD APRAVFPS+VGRPRH+GVMVGM +KD++VG +A+
Sbjct: 6 DESVA-IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 83.8 bits (198), Expect = 4e-17
Identities = 33/48 (68%), Positives = 43/48 (89%)
Frame = +2
Query: 242 LLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
L ++A+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPE
Sbjct: 9 LFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPE 56
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 79.8 bits (188), Expect = 6e-16
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +2
Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
RDG E + E + R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PE
Sbjct: 35 RDGLNPNESYV-GEEGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPE 90
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
+V D G GM +AGFAGD AP+ VFP +VGRPR G+ +SYVG
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVG 46
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 57.6 bits (133), Expect = 3e-09
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
L + YP+ +GIV NWDDME +W H FYNEL++ P
Sbjct: 66 LDINYPVHNGIVQNWDDMEHVWDHAFYNELKINP 99
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVG 254
VV DNG+G K GFAG+ P +VFP +VGRP R++ ++ KD VG
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVG 56
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 52.8 bits (121), Expect = 8e-08
Identities = 22/34 (64%), Positives = 30/34 (88%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVG 197
++V+A+VVD GS CKAG+AG+ AP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
Score = 37.5 bits (83), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 269 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
+R + + P + GIVT+WD ++ +W H F N L + P
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDP 116
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/34 (61%), Positives = 30/34 (88%)
Frame = +3
Query: 96 EDVAAVVVDNGSGMCKAGFAGDVAPRAVFPSIVG 197
++V+A+VVD GS CKAG+AG+ AP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 35.9 bits (79), Expect = 0.009
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 269 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
+R + + PI+ GIV++WD ++ IW H F + L + P
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDP 122
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +2
Query: 287 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 385
L YPIEHG V +WD ME+ W +N LR PE
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPE 118
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 108 AVVVDNGSGMCKAGFAGDVAPRAVFPSIV 194
A+V+DNG+G K GFAG+V P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 43.6 bits (98), Expect = 5e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRPRHQ 212
+V+DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 33.5 bits (73), Expect = 0.050
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 111 VVVDNGSGMCKAGFAGDVAPRAVFPSIVGRP 203
VV+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 287 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
++ PI+ G + N D +IW H F + L +AP
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAP 92
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 296 PIEHGIVTNWDDMEKIWHHTFYNEL 370
PIE G++ +WD ME + + Y L
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGL 81
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 281 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 382
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g71850.1 68414.m08303 expressed protein ; expression supported
by MPSS
Length = 470
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 185 LDRGKAPPSGRDGR--YGTEGLLCRNEAQSKRGILTLK 292
L+RG+ S R GR +G G R++AQS+R ++LK
Sbjct: 426 LERGRRNSSPRSGRRSFGNSG--SRDKAQSRRSKISLK 461
>At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 380
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 254 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSNISCETGLAHTGAIVYYHRGNIFVAHLEL 78
SY+ L+ D H+ P HDR G ++ E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 77 V 75
+
Sbjct: 78 L 78
>At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 352
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 254 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSNISCETGLAHTGAIVYYHRGNIFVAHLEL 78
SY+ L+ D H+ P HDR G ++ E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 77 V 75
+
Sbjct: 78 L 78
>At5g60190.1 68418.m07545 Ulp1 protease family protein low
similarity to sentrin/SUMO-specific protease [Homo
sapiens] GI:6906859; contains Pfam profile PF02902: Ulp1
protease family, C-terminal catalytic domain
Length = 226
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 167 SNISCETGLAHTGAIVYYHRGNIFVAH 87
SN+ G H +VYY N FV H
Sbjct: 96 SNVEVAEGGLHWSLLVYYKEANTFVHH 122
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 26.6 bits (56), Expect = 5.8
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Frame = -3
Query: 339 FSMSSQL-VTIPCSMG--------YLRVRIPLLLCASFLHKSPSVPYRPSR--PDGGA-- 199
+++SSQ T P S G +L ++ PL LC S K+ + Y S P +
Sbjct: 22 YTLSSQTDTTTPSSSGETAIDGDDHLSLQQPLFLCPSLRLKADEINYSYSEILPFNISPY 81
Query: 198 FPRSRGTRREEQHLL 154
FP RG ++ QHLL
Sbjct: 82 FPSIRGADQQVQHLL 96
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 26.6 bits (56), Expect = 5.8
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +2
Query: 110 GGSRQWLRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTL 289
GGS Q Y QG P RG+ P +GR+ E L + +R L
Sbjct: 280 GGSNQVYGYEQGKDETLYLTDEQKPRKRGRKPANGRE-----EALNHVEAERQRREKLNQ 334
Query: 290 KYPIEHGIVTNWDDMEK 340
++ +V N M+K
Sbjct: 335 RFYALRAVVPNISKMDK 351
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 342 IFSMSSQLVTIPCSMGYLRVRIPLLLCAS 256
IFS SS+LVT P S+ +R R ++L S
Sbjct: 10 IFSSSSRLVTTPSSVFPIRQRRRIILVTS 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,130,859
Number of Sequences: 28952
Number of extensions: 195958
Number of successful extensions: 493
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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