Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22KR3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_A0D4S0 Cluster: Chromosome undetermined scaffold_38, wh...    33   6.0  
UniRef50_A3H8Y4 Cluster: Cytochrome-c oxidase precursor; n=1; Ca...    33   6.0  
UniRef50_Q8I517 Cluster: Putative uncharacterized protein; n=3; ...    32   7.9  

>UniRef50_Q22KR3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 517

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = -1

Query: 225 IWCFIGTIRLL-LRCPFQPYLYDMCXSIWLFDAYGPTLYIFRYFYFIL-----THYIHSY 64
           I CF+    +L    P + YLY +C SI       PTL IF  FY+ +     ++ I++Y
Sbjct: 17  ILCFVTQFLILAFFYPEERYLYLLCFSI-------PTLVIFMIFYYFMFWRPQSNRIYTY 69

Query: 63  NF-TLILYI*SI 31
           NF   +L+I SI
Sbjct: 70  NFINTLLFIASI 81


>UniRef50_A0D4S0 Cluster: Chromosome undetermined scaffold_38, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_38,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 248

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 258 LLTLPALLDSIIWCFIGTIRLLLRCPFQPYLYDMCXSIWLFDAYGPTLYIFRYFYFILTH 79
           +L  P   DS  +  +    ++L C    Y YDM  S +LFD    T  + +      TH
Sbjct: 69  ILRYPKTFDSCKYVVLTEEEIILDCGLTRYFYDMQNSDYLFDPVYSTTSLVQMEVLNSTH 128

Query: 78  YI 73
           Y+
Sbjct: 129 YL 130


>UniRef50_A3H8Y4 Cluster: Cytochrome-c oxidase precursor; n=1;
           Caldivirga maquilingensis IC-167|Rep: Cytochrome-c
           oxidase precursor - Caldivirga maquilingensis IC-167
          Length = 529

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -3

Query: 322 VISTVPAADVLAPSLIRSAAFITYVAGTA*LDHMVFYWYHSIAVEMPFPTVPIRYVYXDL 143
           +++T P A +L    I S     +       D+M +++ H I  ++ FP V   Y+  +L
Sbjct: 225 LVATPPLAALLLVMFIGSTVNPNFGINVGLADNMFWFFGHPIVYQLLFPAVAALYLLFEL 284

Query: 142 AFRRVW 125
              R W
Sbjct: 285 GSNRDW 290


>UniRef50_Q8I517 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 2309

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 166 IRYVYXDLAFRRVWADIIYFSIFLFYFNTLYSQLQFYTNFIYIIDR 29
           I  +Y D+ +  ++ D I  S+F ++FN  Y    F+ N +Y I++
Sbjct: 474 IDIIYNDINYDNIYTDEIINSLF-YFFNNPYLIFTFHKNVLYYIEK 518


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,770,945
Number of Sequences: 1657284
Number of extensions: 9983785
Number of successful extensions: 26460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26365
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)