Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   7.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   7.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 203 MVPIKHHMIESSSAGNVSNECGR 271
           M+PI H+++   +  N  N C +
Sbjct: 213 MLPIIHNLLSDKNPPNTENNCAQ 235


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 183 PFQPYLYDMCXSIWLFDAYGP 121
           P  P LYD    +   D YGP
Sbjct: 188 PLTPILYDHIGDLVCVDFYGP 208


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 273 ARPHSLLTLPALLDSII 223
           ++PH +LTL   +DS+I
Sbjct: 126 SQPHQILTLLMDIDSLI 142


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 273 ARPHSLLTLPALLDSII 223
           ++PH +LTL   +DS+I
Sbjct: 286 SQPHQILTLLMDIDSLI 302


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 273 ARPHSLLTLPALLDSII 223
           ++PH +LTL   +DS+I
Sbjct: 286 SQPHQILTLLMDIDSLI 302


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 120 TLYIFRYFYFILTHYIHSYNFTLIL 46
           +LY F Y+  ++T +     +T +L
Sbjct: 74  SLYCFNYYVIVVTTFYKRRTWTRLL 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,577
Number of Sequences: 336
Number of extensions: 2696
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)