Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.35 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.4  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    25   5.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.5  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.5  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   10.0 

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 309 SQLQMYWHRR*SARPHSLLTLPALLDSIIWCFIGTIRLLLRCPFQPYLYDMCXSIWL 139
           S LQMYW++    R + +LT      S I   +  +  L +    PYL+D     W+
Sbjct: 614 SDLQMYWYKNILTRNYRVLTQSISSGSQI-SLLNIVVELKKASNHPYLFDGVEESWM 669


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 171 YLYDMCXSIWLFDAYGPTLYIFRYFYFILTHYIHSYNFTLILYI 40
           Y+++    IW     GP  Y+  Y++F+    +   + T  L I
Sbjct: 328 YVFNRLFRIWWLKYLGPFSYLILYYFFLDISKLQMTSLTFFLLI 371


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 291 WHRR*SARPHSLLTLPALLDSIIWCFIGTIRLLLRCPFQPYLYDMCXSIWLF 136
           WH   + R H+L T P +   +I   +G + + L  P     Y    +I +F
Sbjct: 55  WHNLINIRLHTLNTYPLVHHGVISFILGLLGIFLLMPRFERRYGTLCTIAMF 106


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 293 TGTVVDPLGRIHYLRC 246
           T T+VDPL  ++Y  C
Sbjct: 54  TSTIVDPLAEVNYKNC 69


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 190 EMPFPTVPIRYVYXDLAFRRVWADIIYFSI 101
           E+P PT PI      L     WAD+  F I
Sbjct: 66  ELPIPTEPIMKALGKLLEPMSWADLKKFGI 95


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 105 EKYIMSAHTRRKAKSXYTYRIG-TVGKGISTAIE 203
           ++ I+  H+RRK K+ Y Y     VG+ I    E
Sbjct: 801 QRKILGIHSRRKLKNSYEYECSFLVGENIGMKSE 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,605
Number of Sequences: 5004
Number of extensions: 42439
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)