Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1074 - 25849280-25849324,25849435-25849506,25849601-258496...    27   7.7  
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    27   7.7  
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76...    27   7.7  

>12_02_1074 -
           25849280-25849324,25849435-25849506,25849601-25849663,
           25849756-25849865,25850648-25850761,25851601-25851681,
           25851736-25851850
          Length = 199

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 335 IIHLRNFNRPSCRCTGTV--VDPLGRIHYLRCRHCLTRSYGVLLVPF 201
           +++ RN     C C  TV  V P+  I +L C  C T    VL+ P+
Sbjct: 81  LMYTRNATSVRCSCCDTVNLVRPVSSIAHLNCGQCQT----VLMYPY 123


>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 134 SKSQIXIHISYRYG---WKGHLNSNRMVPIKHHMIESSSAGNVSNE 262
           +K+    + SY  G   W+G + ++   P KH ++ESS+    S E
Sbjct: 848 TKASFSSNASYPQGGDLWQGTMANHSAEPSKHFVVESSNISEQSKE 893


>05_01_0112 -
           757514-758444,758525-758571,759074-759236,759861-760366
          Length = 548

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 116 NVGPYASKSQIXIHISYRYGWKGHLNSNRMVPIKHHMIESSSAGNVSNECGRADQRRCQY 295
           N  P +S ++I   I Y  G  GH++S+         I      NV +    + +RR  Y
Sbjct: 353 NANPDSSNNKI--RICYECGTPGHISSSCPNKKASEAISDEKKANVDSVTASSKKRRTCY 410

Query: 296 ICSWDG 313
            C   G
Sbjct: 411 ECGIPG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,879
Number of Sequences: 37544
Number of extensions: 270328
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)