Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)                   30   1.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.9  
SB_19041| Best HMM Match : F5_F8_type_C (HMM E-Value=3e-29)            29   1.9  
SB_15099| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 29   2.6  
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_32546| Best HMM Match : DUF1319 (HMM E-Value=9.3)                   27   7.9  

>SB_16204| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)
          Length = 294

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 222 WCFIGTIRLLLRCPFQPYLYDMCXSI 145
           W F GTI L+L C   P++YD+C  +
Sbjct: 138 WLFGGTIGLVL-CKVTPFMYDVCLMV 162


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 122 GPYASKSQIXIHISYRYGWKGHLNSNR 202
           GP++SK Q   H  YR GW   +N+N+
Sbjct: 186 GPWSSKLQDRNHGHYRGGWVPRINNNK 212


>SB_19041| Best HMM Match : F5_F8_type_C (HMM E-Value=3e-29)
          Length = 156

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 122 GPYASKSQIXIHISYRYGWKGHLNSNR 202
           GP++SK Q   H  YR GW   +N+N+
Sbjct: 30  GPWSSKLQDRNHGHYRGGWVPRINNNK 56


>SB_15099| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 318

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 187 MPFPTVPIRYVYXDLAFRRVWADIIYFSIFLFYFNTLYSQL 65
           +PF T+ I   + +   R V +D+IYF+  L Y N+  + +
Sbjct: 249 LPFHTMNIIVNFQESLIRHVSSDVIYFTKLLHYSNSFINPI 289


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 163 RYVYXDLAFRRVWADIIYFSIFLFYFNTLYSQLQFYTNFIYIIDRF 26
           R V   +AF  + A+I+  ++ +  FN  +S++Q  +N I+   RF
Sbjct: 41  RLVTVIMAFYLLVANILLLNLLIAIFNNTFSEVQANSNQIWKFQRF 86


>SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 237 LDSIIWCFIGTIRLLLRCPFQPYL 166
           L  I+W FI T+ + L   F+PY+
Sbjct: 222 LQKIVWLFISTMLISLHVRFEPYI 245


>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = -3

Query: 214 YWYHSIAVEMPFPTVPIRYVYXDL----AFRRVWADIIYFSIFLFY-FNTLYSQLQFYT 53
           Y Y +++++  + TV I+Y Y  +    A++ V    +Y ++ + Y + T+  Q  ++T
Sbjct: 276 YTYRTVSIQYAYRTVSIQYAYRTVSIQYAYQTVSIQYVYRTVSIQYAYRTVSIQYAYWT 334


>SB_32546| Best HMM Match : DUF1319 (HMM E-Value=9.3)
          Length = 179

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 264 AAERINDGASTSAAGT-VEITQMDDEIASVSTSG 362
           AAE++ +  + S+  + VE+T+M D+IAS  T G
Sbjct: 76  AAEKVEEMRTQSSPSSGVEVTKMVDDIASCLTKG 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,385
Number of Sequences: 59808
Number of extensions: 311531
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)