Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    28   4.0  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    28   5.2  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    27   6.9  
AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical ...    27   6.9  
U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 291 WHRR*SARPHSLLTLPALLDSIIWCFIGTIRLLLRCPFQP 172
           W R  ++R  S +T  ALLDS+I+ F   I ++L   F P
Sbjct: 197 WKR--TSRRLSKVTQIALLDSLIYLFFNVIPIILYSHFSP 234


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 118 IIYFSIFLFYFNTLYSQLQFYTNFIYIIDRF 26
           I Y  IF F+ N L   LQ Y + I I DR+
Sbjct: 289 ITYTMIFFFFKNMLIILLQTYRSIIIINDRY 319


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 167 RYGWKGHLNSNRMVPIKHHMIESSSAGNVSNECGRADQRRC 289
           RYG +G+L+   M P + H    SS+  +SN   R   R C
Sbjct: 85  RYGSEGNLD---MSPSRRHPGRPSSSATISNSARRRRYRSC 122


>AF024500-6|AAB70361.1|  357|Caenorhabditis elegans Hypothetical
           protein K06H6.1 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 353 RYRS--DFIIHLRNFNRPSCRCTGTVVDPLGRIHYLRCRHCLTRSYGVLLVPFDCC*DAL 180
           RY S  DF +   +         G  +DP+G I  +    C+ +  G+L + F    DAL
Sbjct: 239 RYASTFDFAVSFSSIEHSGLGRYGDPIDPIGDIREMLKIKCVLKPGGLLFIGFPLGTDAL 298

Query: 179 SNRTYTI 159
               + I
Sbjct: 299 PYNAHRI 305


>U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical
           protein K06A9.2 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 145 LAFRRVWADIIYFSI---FLFYFNTLYSQLQFYTNF 47
           L F+R W D  +F     +LF  N L  +LQ  TNF
Sbjct: 45  LMFKRWWVDRKFFRYQDDYLFILNNLPDRLQETTNF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,305
Number of Sequences: 27780
Number of extensions: 238348
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)