Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.4  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 178 PTVPIRYVYXDLAFRRVWAD 119
           PT+ I Y+Y  +A  R+ AD
Sbjct: 92  PTILISYIYILMAILRMSAD 111


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 489 KSYRARYGRSVEPC 530
           +SY A   RS++PC
Sbjct: 69  ESYLAESSRSIDPC 82


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 345 KRFHHPSA*FQPSQLQM 295
           +RF  P A FQPS L M
Sbjct: 28  ERFRCPEALFQPSFLGM 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,443
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)