Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20086X
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   0.75 
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   3.0  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    25   3.0  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    24   5.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   7.0  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    24   7.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    23   9.2  

>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 217 KMLESRWLFSDCKSRYRGRSARYATDAPTLLP 312
           ++L ++W  S  K++Y  R+ RY ++   L P
Sbjct: 83  QLLVTKWFASTLKNQYAARNERYGSEKKPLNP 114


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 240 ILGLQVSLSGTVGTVCNRCAYTVT 311
           ++ + VSLS T G++C    Y +T
Sbjct: 446 VVQVGVSLSNTFGSICGGAIYNIT 469


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 259 ETCNPRIANGSLASCSIRHASGPRWRMFEKHFTQVGVRP 143
           ET  P+IA        I H     + M E+H+  V + P
Sbjct: 406 ETMFPQIARNKTEHVYINHIGNAWFAMSERHYPLVSLAP 444


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 108 MCGIWATFGVTGGLT---PTCVKCFSNIRHRGPD 200
           MCGI A   V   +    P  +     +RHRGPD
Sbjct: 1   MCGILAVHHVAEDIEAFKPKALHLSKQLRHRGPD 34


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 DAREPLAILGLQVSLSGTVGTVCNRCAYTVTL 314
           D  + L   G+  +LSG VG++ N   YT +L
Sbjct: 454 DTDKELIAHGVSNTLSGAVGSIQNYMTYTNSL 485


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 246 GLQVSLSGTVGTVCNRCAYTVTL 314
           G ++S++     VCN+C+ T+ L
Sbjct: 193 GSEISIATKFSLVCNKCSNTLRL 215


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 107 HVRYLGNIRCNWW 145
           HVR+LGN+  N W
Sbjct: 44  HVRFLGNLVLNLW 56


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 261 LSGTVGTVCNRCAYTVTL 314
           LSG VG + N C Y + L
Sbjct: 410 LSGLVGDILNICEYNIKL 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,460
Number of Sequences: 5004
Number of extensions: 24257
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)