Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20086X
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0736 + 20205934-20206551,20207258-20207426,20207562-202076...    27   4.9  
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           26   6.4  
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    26   8.5  
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    26   8.5  
06_03_1143 + 27971561-27972670,27973868-27974458                       26   8.5  

>10_08_0736 +
           20205934-20206551,20207258-20207426,20207562-20207692,
           20208100-20208144,20208145-20208939,20209081-20209128,
           20209504-20209620,20210087-20210161
          Length = 665

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -1

Query: 241 IANGSLASCSIRHASGPRWRMFEKHFTQVGVRPPVTPNVAQIPHMLSLM*NRTVTETISI 62
           + +G++A C++  A GP+W    +    +         V ++P++L L  +   +E + I
Sbjct: 284 LIDGTIAGCALDGAEGPQWMEAWRMINVIDYTFTAHSQVREMPNVLILPRSADYSEEVWI 343


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 NWWPHSYLRKMFFKHSPPRSG 199
           +W PH   R +F   SPPR G
Sbjct: 185 SWEPHHDRRSLFRPRSPPRHG 205


>12_02_0849 -
           23640091-23640279,23640537-23640677,23640756-23642203,
           23642300-23642372,23642452-23642572,23642689-23642791,
           23642979-23643052,23643140-23643285,23643368-23643476,
           23643580-23643704,23643989-23644342,23644440-23644503,
           23644581-23645032
          Length = 1132

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 131 RCNWWP-HSYLRKMFFKHSPPRSG 199
           R N WP H Y RK+F    PP  G
Sbjct: 516 RPNHWPKHDYTRKIFVGGLPPSVG 539


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 208 RHASGPRWRMFEKHFTQVGVRPPVTPNVAQIP 113
           RHA+  R R F +    +  RP VTPN  Q P
Sbjct: 591 RHATLDRRRAFNRRIRILLFRPRVTPNGWQNP 622


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 229 SLASCSIRHAS-GPRWRMFEKHFTQVGVRPP 140
           S+  C++  A  GP WR   ++F    V PP
Sbjct: 114 SVGKCTVNSAPYGPLWRALRRNFVAEIVSPP 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,222
Number of Sequences: 37544
Number of extensions: 171273
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)