Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20086X
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    30   0.35 
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z68115-4|CAA92165.2|  206|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr...    26   5.7  
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l...    26   5.7  
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l...    26   5.7  
AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator prote...    26   5.7  
AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator prote...    26   5.7  
AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic ...    26   5.7  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    26   5.7  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    26   5.7  
Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical p...    25   10.0 
X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.        25   10.0 
AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical ...    25   10.0 
AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical ...    25   10.0 
AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical ...    25   10.0 
AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical ...    25   10.0 

>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 MCGIWATFGVTGGLTPTCVKCFSNIRHRGPDAWRIEQ 218
           MCGIWA  G    +TP     F  I  RGPD   +E+
Sbjct: 1   MCGIWAIIGEQ--VTPQQQDAFMKIVGRGPDLTVLEE 35


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 162 VKCFSNIRHRGPDAWRIEQDAREPLAILGLQVSLSGTV 275
           +KC S  RHR  D  ++EQ  R+   +LG +  +  T+
Sbjct: 577 IKCSSIERHRESDKHQLEQAERKYADLLGKKAEIEATL 614


>Z68115-4|CAA92165.2|  206|Caenorhabditis elegans Hypothetical
           protein F19H6.5 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 245 ENSQRLSSILLNSPRVRTSVANV*KTFYAGRSEATSYTECCPNTAHAVLNVEP 87
           EN   +   ++N   VRT +AN  K  Y    E T+      NT H +    P
Sbjct: 42  ENGNVVKIQVVNENAVRTLLANGFKKSYPAPEEETAIETDPENTQHVICRPSP 94


>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
           protein B0457.1b protein.
          Length = 1012

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  H*GQHVRYLGNIRCNWWPHSYLR 163
           H    VR+L N  C WW H  L+
Sbjct: 482 HKESSVRHLSNPTCVWWNHHELK 504


>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
           protein B0457.1a protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  H*GQHVRYLGNIRCNWWPHSYLR 163
           H    VR+L N  C WW H  L+
Sbjct: 484 HKESSVRHLSNPTCVWWNHHELK 506


>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
           protein LAT-1B protein.
          Length = 1012

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  H*GQHVRYLGNIRCNWWPHSYLR 163
           H    VR+L N  C WW H  L+
Sbjct: 482 HKESSVRHLSNPTCVWWNHHELK 504


>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
           protein LAT-1A protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  H*GQHVRYLGNIRCNWWPHSYLR 163
           H    VR+L N  C WW H  L+
Sbjct: 484 HKESSVRHLSNPTCVWWNHHELK 506


>AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator protein
           2, isoform b protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 169 HFTQVGVRPPVTPNVAQI 116
           HF Q G  PP+ PN+ +I
Sbjct: 252 HFLQCGTFPPILPNLQEI 269


>AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator protein
           2, isoform a protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 169 HFTQVGVRPPVTPNVAQI 116
           HF Q G  PP+ PN+ +I
Sbjct: 252 HFLQCGTFPPILPNLQEI 269


>AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform c protein.
          Length = 906

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 192 GPDAWRIEQDAREPLAILGLQVSLSGTVGTVC 287
           GP  +  + D R  +  L + +SLSGTV  +C
Sbjct: 819 GPIYFATQSDFRIQITSLCMCISLSGTVALIC 850


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 192 GPDAWRIEQDAREPLAILGLQVSLSGTVGTVC 287
           GP  +  + D R  +  L + +SLSGTV  +C
Sbjct: 819 GPIYFATQSDFRIQITSLCMCISLSGTVALIC 850


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 192 GPDAWRIEQDAREPLAILGLQVSLSGTVGTVC 287
           GP  +  + D R  +  L + +SLSGTV  +C
Sbjct: 819 GPIYFATQSDFRIQITSLCMCISLSGTVALIC 850


>Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 405 SYQSTESEVSKASVTCPPPAHTVINIE 431


>Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 366 SYQSTESEVSKASVTCPPPAHTVINIE 392


>Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 379 SYQSTESEVSKASVTCPPPAHTVINIE 405


>Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 381 SYQSTESEVSKASVTCPPPAHTVINIE 407


>X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.
          Length = 438

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 381 SYQSTESEVSKASVTCPPPAHTVINIE 407


>AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 405 SYQSTESEVSKASVTCPPPAHTVINIE 431


>AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 366 SYQSTESEVSKASVTCPPPAHTVINIE 392


>AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 379 SYQSTESEVSKASVTCPPPAHTVINIE 405


>AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 TFYAGRSEATSYTECCPNTAHAVLNVE 90
           ++ +  SE +  +  CP  AH V+N+E
Sbjct: 381 SYQSTESEVSKASVTCPPPAHTVINIE 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,666,049
Number of Sequences: 27780
Number of extensions: 144085
Number of successful extensions: 341
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)