Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20085
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 83 2e-16
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 32 0.35
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0) 31 0.81
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 31 1.1
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 2.5
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 3.3
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 3.3
SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6) 29 3.3
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 4.3
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 5.7
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 7.5
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 9.9
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/50 (78%), Positives = 43/50 (86%)
Frame = +2
Query: 362 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQR 511
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQ+
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -3
Query: 586 GGPLHAASQTHHVHTL*NPTSLIRRSLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNA 407
GG L Q H + NP++ +L+ LE TA + V A+ DGLSNA
Sbjct: 27 GGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPTQTSRSVALAY--DGLSNA 84
Query: 406 NTC 398
N C
Sbjct: 85 NVC 87
>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 888
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 460 GHRGSAPCQVQVPRTSKIYVSKKWGFTKYERDEF 561
G +G PC QV T +Y K GF Y+ D F
Sbjct: 368 GAKGFEPCGPQVKITKPLYERLKSGFVTYQEDAF 401
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 319 IDADNVERVKSHADMELILSAVFTRYLLQQIRPASKASELSCSYSSDTK 173
+ A+ V+R+ SH M+ + S + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 25 GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 159
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 511 SLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 365
S ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 71 SCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 216 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 100
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 244 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 244 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_9876| Best HMM Match : TSNR_N (HMM E-Value=7.6)
Length = 197
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 532 PTSLIRRSLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTC 398
P+ +RR+ + LG L +PPV R H G+ N +TC
Sbjct: 103 PSLKVRRATVASIESLGEGHRKGSLFMPPVQRGKKH-GVINIHTC 146
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 413 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 273
+C V Q P AC + S GA + Y C K V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 48 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 228 IC 233
+C
Sbjct: 500 MC 501
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 370 CVWQASGYCSTCSHWTAHHV 429
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +3
Query: 246 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 359
L+ + +++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 726 LICSKQKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 226 RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
R +S+ S+ SC+ S + SGK + LF KS+ R
Sbjct: 983 RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,287,473
Number of Sequences: 59808
Number of extensions: 533515
Number of successful extensions: 1652
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -