Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20085
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 138 4e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 138 4e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 137 5e-33
At5g48310.1 68418.m05968 expressed protein 31 0.87
At5g47870.1 68418.m05914 expressed protein 29 3.5
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 4.7
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 28 4.7
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 6.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 138 bits (333), Expect = 4e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTA 260
SSEALEA RI CNKY+VK+A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 136 bits (330), Expect = 9e-33
Identities = 64/92 (69%), Positives = 71/92 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
VR D EALRRAKFKFPGRQ+ R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDG 600
P KI VS+KWGFTK+ R E+ KLR R+ DG
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDG 194
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 138 bits (333), Expect = 4e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTA 260
SSEALEA RI CNKY+VK+A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 135 bits (327), Expect = 2e-32
Identities = 64/92 (69%), Positives = 71/92 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
VR D EALRRAKFKFPGRQ+ R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDG 600
P KI VS+KWGFTK+ R +F KLR+E R+ DG
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDG 194
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 137 bits (332), Expect = 5e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTA 260
SSEALEA RI CNKY+VK+A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 135 bits (327), Expect = 2e-32
Identities = 64/92 (69%), Positives = 71/92 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
VR D EALRRAKFKFPGRQ+ R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDG 600
P KI VS+KWGFTK+ R ++ KLR+E R+ DG
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDG 194
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 197 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 21
LF+ + +++ A K+ N L + I+ +L T+ R+R F+ AVP SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 281 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 460
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 461 VIEALRRAKFKFP 499
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 SDEYEQLSSEALEAGRICCNKYLV 251
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 422
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 423 S 425
+
Sbjct: 528 N 528
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVHTARNMDLSTLGG 648
P + YV + Y F ++ +G AN+G ++H R ++ + GG
Sbjct: 488 PHSFSEYVDNFANGSPYTSSAFSEMVSDGSKANEGFMIHNVRGVEGFSGGG 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,280
Number of Sequences: 28952
Number of extensions: 354397
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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