Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20084
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.68
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.89
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.1
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 3.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.3
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 8.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.3
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 8.3
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.68
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +3
Query: 66 SLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMN 245
S + S+V +++ L S + S+ S + S + ++ ++ +
Sbjct: 495 STLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFS 554
Query: 246 CMETPINFG---SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 374
T I+ G S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 555 SSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 358 VHKLNRVFGEDKSELNWETIPDDVL 284
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 114 QLYNSVVVADYDSAVEKSKHLYEEKKS 194
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 303 VSQLSSDLSSPKTRLSLCTSATV 371
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 476 LWENNKVYFKI*TLNVTNTWYWESALTGTATIWPSESTAS 595
LW N+ VY+ + + + T T S TG+ T + +TAS
Sbjct: 737 LWANDAVYYPVSSSSTTTT----STSTGSVTTTSTTATAS 772
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 433 QGQDKPESQLEVNRSVGEQQGLLQDLNTERNQYLVLGVGTNW 558
+G KP + +++++ + G L+D E N L G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 530 TWYWESALTGTATIWPSESTASIVS 604
T Y+ + G ATI PS TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 252 ETPINFGSRAPRTSSGIVSQLSSDLSS 332
E P+N G A G++S LSS LSS
Sbjct: 928 EPPLNSGKPALSKEGGLLSALSSYLSS 954
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 299 PGRCPWSPGAKVDRRLHAVHLVVSYQFVHDI 207
P + PW PG K++ V Y+ +H+I
Sbjct: 70 PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 8.3
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 197 SH-HKCREQTDTKQQDELHGDAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 373
SH HK +E+ KQQD H + L + K+ +D R + K++G+
Sbjct: 316 SHVHKSKEEI--KQQDNFHEQSRALKEKRKKE--QD---ENVRRKRENKKRRKDQKKEGI 368
Query: 374 ALTLSNDVQGDDGRPAYGD 430
+ ND G++G AY D
Sbjct: 369 TSSNKNDDSGNEGSSAYSD 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,754
Number of Sequences: 5004
Number of extensions: 50437
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -